Guide to the Human Genome
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Name: HS3ST3A1 Sequence: fasta or formatted (406aa) NCBI GI: 5174465
Description:

heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3A1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         33           3
 C cysteine            1.2          5           1
 D aspartate           4.7         19           2
 E glutamate           5.9         24           3
 F phenylalanine       4.7         19           2
 G glycine            10.1         41           3
 H histidine           2.2          9           1
 I isoleucine          4.4         18           3
 K lysine              5.2         21           2
 L leucine            10.6         43           3
 M methionine          1.7          7           1
 N asparagine          0.7          3           1
 P proline             7.6         31           2
 Q glutamine           3.0         12           1
 R arginine            8.6         35           4
 S serine              6.7         27           2
 T threonine           5.7         23           1
 V valine              4.7         19           3
 W tryptophan          1.7          7           1
 Y tyrosine            2.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3... 
HS3ST3B1              0.645   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST4                0.516   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
HS3ST6                0.501   heparan sulfate (glucosamine) 3-O-sulfotransferase ...
HS3ST2                0.491   heparan sulfate D-glucosaminyl  3-O-sulfotransferase ...
HS3ST5                0.272   heparan sulfate (glucosamine) 3-O-sulfotransferase 5...
HS3ST1                0.250   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1...
NDST3                 0.128   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
NDST4                 0.123   heparan sulfate N-deacetylase/N-sulfotransferase 4 [...
NDST2                 0.120   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
NDST1                 0.118   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
CHST15                0.034   B cell RAG associated protein 
COL7A1                0.020   alpha 1 type VII collagen precursor 
COL1A1                0.014   alpha 1 type I collagen preproprotein 
LOC100289782          0.014   PREDICTED: hypothetical protein XP_002347588 
SOLH                  0.014   small optic lobes 
LOC100287063          0.012   PREDICTED: hypothetical protein 
FUS                   0.012   fusion (involved in t(12;16) in malignant liposarcoma...
NKX1-2                0.011   NK1 homeobox 2 
RANBP9                0.011   RAN binding protein 9 
NKX1-2                0.011   PREDICTED: NK1 homeobox 2 
NKX1-2                0.011   PREDICTED: NK1 homeobox 2 
NKX1-2                0.011   PREDICTED: NK1 homeobox 2 
SYNGAP1               0.011   synaptic Ras GTPase activating protein 1 
CHST7                 0.011   chondroitin 6-sulfotransferase 7 
CASKIN2               0.011   cask-interacting protein 2 isoform b 
CASKIN2               0.011   cask-interacting protein 2 isoform a 
SULT1C4               0.011   sulfotransferase family, cytosolic, 1C, member 2 [Ho...
C14orf104             0.011   kintoun isoform 2 
C14orf104             0.011   kintoun isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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