Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: HS3ST4 Sequence: fasta or formatted (456aa) NCBI GI: 104876423
Description:

heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         40           3
 C cysteine            0.9          4           1
 D aspartate           4.2         19           1
 E glutamate           6.1         28           2
 F phenylalanine       3.7         17           2
 G glycine             7.9         36           4
 H histidine           1.8          8           1
 I isoleucine          3.9         18           2
 K lysine              5.9         27           2
 L leucine             9.4         43           2
 M methionine          2.0          9           1
 N asparagine          2.2         10           1
 P proline            13.6         62          10
 Q glutamine           3.7         17           1
 R arginine            5.5         25           2
 S serine              6.6         30           2
 T threonine           5.0         23           2
 V valine              4.6         21           3
 W tryptophan          1.5          7           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate D-glucosaminyl 3-O-sulfotransferase... 
HS3ST3B1              0.458   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST2                0.458   heparan sulfate D-glucosaminyl  3-O-sulfotransferase ...
HS3ST3A1              0.452   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST6                0.410   heparan sulfate (glucosamine) 3-O-sulfotransferase ...
HS3ST5                0.243   heparan sulfate (glucosamine) 3-O-sulfotransferase 5...
HS3ST1                0.225   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1...
NDST3                 0.115   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
NDST4                 0.110   heparan sulfate N-deacetylase/N-sulfotransferase 4 [...
NDST2                 0.107   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
NDST1                 0.101   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
DIAPH1                0.051   diaphanous 1 isoform 2 
DIAPH1                0.051   diaphanous 1 isoform 1 
WIPF3                 0.049   WAS/WASL interacting protein family, member 3 [Homo...
RAPH1                 0.048   Ras association and pleckstrin homology domains 1 is...
WASF2                 0.046   WAS protein family, member 2 
WASL                  0.044   Wiskott-Aldrich syndrome gene-like protein 
SF1                   0.042   splicing factor 1 isoform 1 
RANBP9                0.040   RAN binding protein 9 
WBP11                 0.040   WW domain binding protein 11 
SF1                   0.039   splicing factor 1 isoform 2 
WAS                   0.038   Wiskott-Aldrich syndrome protein 
CPSF6                 0.037   cleavage and polyadenylation specific factor 6, 68 ...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 
FMNL1                 0.036   formin-like 1 
MUC7                  0.036   mucin 7, secreted precursor 
MUC7                  0.036   mucin 7, secreted precursor 
MUC7                  0.036   mucin 7, secreted precursor 
SF1                   0.036   splicing factor 1 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press