Guide to the Human Genome
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Name: HS3ST1 Sequence: fasta or formatted (307aa) NCBI GI: 4826764
Description:

heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1 precursor

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         16           3
 C cysteine            0.7          2           1
 D aspartate           5.2         16           2
 E glutamate           5.9         18           2
 F phenylalanine       5.5         17           2
 G glycine             5.2         16           2
 H histidine           5.2         16           1
 I isoleucine          3.6         11           3
 K lysine              5.2         16           2
 L leucine            12.4         38           3
 M methionine          2.0          6           1
 N asparagine          3.9         12           1
 P proline             7.2         22           1
 Q glutamine           5.2         16           2
 R arginine            7.2         22           1
 S serine              5.5         17           1
 T threonine           2.9          9           1
 V valine              6.5         20           1
 W tryptophan          1.6          5           1
 Y tyrosine            3.9         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 1... 
HS3ST5                0.448   heparan sulfate (glucosamine) 3-O-sulfotransferase 5...
HS3ST2                0.339   heparan sulfate D-glucosaminyl  3-O-sulfotransferase ...
HS3ST4                0.337   heparan sulfate D-glucosaminyl 3-O-sulfotransferase...
HS3ST6                0.331   heparan sulfate (glucosamine) 3-O-sulfotransferase ...
HS3ST3B1              0.327   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
HS3ST3A1              0.327   heparan sulfate D-glucosaminyl 3-O-sulfotransferase 3...
NDST4                 0.173   heparan sulfate N-deacetylase/N-sulfotransferase 4 [...
NDST3                 0.168   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
NDST2                 0.155   heparan glucosaminyl N-deacetylase/N-sulfotransferase...
NDST1                 0.137   N-deacetylase/N-sulfotransferase (heparan glucosaminy...
CHST15                0.023   B cell RAG associated protein 
GK2                   0.013   glycerol kinase 2 
TPST2                 0.007   tyrosylprotein sulfotransferase 2 
TPST2                 0.007   tyrosylprotein sulfotransferase 2 
CYBRD1                0.007   cytochrome b reductase 1 isoform 2 
TBC1D1                0.007   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
GK                    0.007   glycerol kinase isoform c 
GK                    0.007   glycerol kinase isoform a 
GK                    0.007   glycerol kinase isoform b 
CYBRD1                0.007   cytochrome b reductase 1 isoform 1 
SULT1C3               0.007   sulfotransferase family, cytosolic, 1C, member 3 [Ho...
BZRAP1                0.007   peripheral benzodiazepine receptor-associated prote...
VCAN                  0.005   versican isoform 1 
GPR161                0.005   G protein-coupled receptor 161 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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