Guide to the Human Genome
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Name: JSRP1 Sequence: fasta or formatted (331aa) NCBI GI: 21389423
Description:

junctional sarcoplasmic reticulum protein 1

Referenced in:

Muscle

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.7         42           2
 C cysteine            0.9          3           1
 D aspartate           4.5         15           1
 E glutamate          12.1         40           3
 F phenylalanine       0.6          2           1
 G glycine             6.6         22           2
 H histidine           0.9          3           1
 I isoleucine          0.3          1           1
 K lysine              6.6         22           2
 L leucine             6.6         22           2
 M methionine          0.9          3           1
 N asparagine          0.6          2           1
 P proline            14.5         48           6
 Q glutamine           3.6         12           1
 R arginine           12.4         41           2
 S serine              7.3         24           2
 T threonine           3.0         10           2
 V valine              3.9         13           1
 W tryptophan          1.8          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   junctional sarcoplasmic reticulum protein 1 
SRRM1                 0.060   serine/arginine repetitive matrix 1 
SCAF1                 0.048   SR-related CTD-associated factor 1 
PRR12                 0.048   proline rich 12 
CHAF1A                0.046   chromatin assembly factor 1, subunit A (p150) 
AEBP1                 0.046   adipocyte enhancer binding protein 1 precursor [Homo...
LOC100133599          0.046   PREDICTED: hypothetical protein 
TTN                   0.044   titin isoform N2-A 
SRRM2                 0.043   splicing coactivator subunit SRm300 
KIAA1211              0.041   hypothetical protein LOC57482 
SYN1                  0.041   synapsin I isoform Ia 
SYN1                  0.041   synapsin I isoform Ib 
PRG4                  0.040   proteoglycan 4 isoform D 
PRG4                  0.040   proteoglycan 4 isoform C 
PRG4                  0.040   proteoglycan 4 isoform B 
PRG4                  0.040   proteoglycan 4 isoform A 
NEFH                  0.040   neurofilament, heavy polypeptide 200kDa 
LOC100133599          0.038   PREDICTED: hypothetical protein 
SFRS17A               0.038   DNA segment on chromosome X and Y (unique) 155 expre...
LOC100132247          0.038   hypothetical protein LOC100132247 
NPIPL3                0.038   nuclear pore complex interacting protein-like 3 [Ho...
MAP7D1                0.038   MAP7 domain containing 1 
MICALL1               0.038   molecule interacting with Rab13 
LMTK3                 0.037   lemur tyrosine kinase 3 
SPEN                  0.037   spen homolog, transcriptional regulator 
CHD6                  0.037   chromodomain helicase DNA binding protein 6 
FLJ22184              0.037   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.035   PREDICTED: hypothetical protein FLJ22184 
MYST3                 0.035   MYST histone acetyltransferase (monocytic leukemia)...
MYST3                 0.035   MYST histone acetyltransferase (monocytic leukemia)...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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