Guide to the Human Genome
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Name: CNGB1 Sequence: fasta or formatted (1251aa) NCBI GI: 114205399
Description:

cyclic nucleotide gated channel beta 1 isoform a

Referenced in:

Calcium and TRP Cation Channels
Photoreceptors and Related Functions

Other entries for this name:
alt prot [299aa] cyclic nucleotide gated channel beta 1 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         96           3
 C cysteine            1.3         16           2
 D aspartate           4.9         61           2
 E glutamate          12.3        154          15
 F phenylalanine       2.2         28           2
 G glycine             5.4         68           3
 H histidine           1.6         20           2
 I isoleucine          3.4         42           2
 K lysine              6.4         80           2
 L leucine             8.9        111           3
 M methionine          2.6         32           1
 N asparagine          2.5         31           2
 P proline             9.6        120           3
 Q glutamine           4.4         55           2
 R arginine            4.4         55           2
 S serine              6.6         82           2
 T threonine           5.0         62           2
 V valine              6.8         85           2
 W tryptophan          1.6         20           1
 Y tyrosine            2.6         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cyclic nucleotide gated channel beta 1 isoform a [H... 
CNGB3                 0.279   cyclic nucleotide gated channel beta 3 
CNGB1                 0.228   cyclic nucleotide gated channel beta 1 isoform b [H...
CNGA3                 0.115   cyclic nucleotide gated channel alpha 3 isoform 2 [...
CNGA3                 0.115   cyclic nucleotide gated channel alpha 3 isoform 1 [Ho...
CNGA1                 0.115   cyclic nucleotide gated channel alpha 1 isoform 1 [...
CNGA1                 0.115   cyclic nucleotide gated channel alpha 1 isoform 2 [H...
CNGA2                 0.107   cyclic nucleotide gated channel alpha 2 
CNGA4                 0.096   cyclic nucleotide gated channel alpha 4 
HCN2                  0.053   hyperpolarization activated cyclic nucleotide-gated...
HCN4                  0.052   hyperpolarization activated cyclic nucleotide-gated p...
HCN1                  0.052   hyperpolarization activated cyclic nucleotide-gated...
HCN3                  0.050   hyperpolarization activated cyclic nucleotide-gated ...
KCNH1                 0.035   potassium voltage-gated channel, subfamily H, member ...
KCNH4                 0.035   potassium voltage-gated channel, subfamily H, member ...
KCNH5                 0.033   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.033   potassium voltage-gated channel, subfamily H, member...
KCNH1                 0.031   potassium voltage-gated channel, subfamily H, member...
KCNH5                 0.029   potassium voltage-gated channel, subfamily H, member...
KCNH2                 0.029   voltage-gated potassium channel, subfamily H, member...
KCNH2                 0.029   voltage-gated potassium channel, subfamily H, member ...
KCNH8                 0.029   potassium voltage-gated channel, subfamily H, member...
KCNH7                 0.028   potassium voltage-gated channel, subfamily H, member...
KCNH6                 0.027   potassium voltage-gated channel, subfamily H, member...
KCNH3                 0.026   potassium voltage-gated channel, subfamily H (eag-re...
KCNH2                 0.024   voltage-gated potassium channel, subfamily H, member...
PELP1                 0.024   proline, glutamic acid and leucine rich protein 1 [...
KCNH6                 0.024   potassium voltage-gated channel, subfamily H, member...
NEFH                  0.022   neurofilament, heavy polypeptide 200kDa 
RP1L1                 0.022   retinitis pigmentosa 1-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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