Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATG9B Sequence: fasta or formatted (924aa) NCBI GI: 239582720
Description:

ATG9 autophagy related 9 homolog B

Referenced in:

Additional Membrane Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         93           3
 C cysteine            1.8         17           1
 D aspartate           3.2         30           1
 E glutamate           4.2         39           2
 F phenylalanine       4.2         39           2
 G glycine             7.0         65           3
 H histidine           3.5         32           2
 I isoleucine          2.6         24           2
 K lysine              1.2         11           1
 L leucine            14.0        129           3
 M methionine          1.1         10           1
 N asparagine          1.5         14           1
 P proline            10.4         96           6
 Q glutamine           6.0         55           6
 R arginine            7.0         65           4
 S serine              9.1         84           2
 T threonine           4.4         41           2
 V valine              4.8         44           1
 W tryptophan          2.2         20           1
 Y tyrosine            1.7         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATG9 autophagy related 9 homolog B 
ATG9A                 0.339   APG9 autophagy 9-like 1 
ATG9A                 0.339   APG9 autophagy 9-like 1 
CIC                   0.018   capicua homolog 
SFPQ                  0.017   splicing factor proline/glutamine rich (polypyrimidin...
FLJ22184              0.015   PREDICTED: hypothetical protein LOC80164 
DGKK                  0.015   diacylglycerol kinase kappa 
WIPF3                 0.014   WAS/WASL interacting protein family, member 3 [Homo...
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
SP5                   0.014   Sp5 transcription factor 
WASF1                 0.013   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.013   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.013   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.013   Wiskott-Aldrich syndrome protein family member 1 [Hom...
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
DIAPH1                0.013   diaphanous 1 isoform 2 
DIAPH1                0.013   diaphanous 1 isoform 1 
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.013   WAS/WASL interacting protein family, member 1 
C6orf132              0.013   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.013   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.013   PREDICTED: hypothetical protein LOC647024 
PELP1                 0.013   proline, glutamic acid and leucine rich protein 1 [...
WASL                  0.012   Wiskott-Aldrich syndrome gene-like protein 
TAF4                  0.012   TBP-associated factor 4 
MAPK1IP1L             0.012   MAPK-interacting and spindle-stabilizing protein [Ho...
APBB1IP               0.012   amyloid beta (A4) precursor protein-binding, family ...
WAS                   0.011   Wiskott-Aldrich syndrome protein 
WNK4                  0.011   WNK lysine deficient protein kinase 4 
COL27A1               0.011   collagen, type XXVII, alpha 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press