Guide to the Human Genome
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Name: SON Sequence: fasta or formatted (2303aa) NCBI GI: 21040314
Description:

SON DNA-binding protein isoform B

Not currently referenced in the text

Other entries for this name:
alt prot {2426aa} SON DNA-binding protein isoform F
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        174           3
 C cysteine            0.3          7           1
 D aspartate           3.9         90           3
 E glutamate           9.2        212           5
 F phenylalanine       1.1         26           2
 G glycine             3.9         89           2
 H histidine           1.5         34           2
 I isoleucine          2.5         58           1
 K lysine              4.5        103           7
 L leucine             7.6        175           2
 M methionine          4.9        113           3
 N asparagine          1.9         44           3
 P proline            10.2        236           4
 Q glutamine           3.3         76           2
 R arginine            6.6        153           5
 S serine             14.6        337           3
 T threonine           7.4        170           3
 V valine              6.9        160           2
 W tryptophan          0.2          5           2
 Y tyrosine            1.8         41           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SON DNA-binding protein isoform B 
SON                   0.961   SON DNA-binding protein isoform F 
SRRM2                 0.030   splicing coactivator subunit SRm300 
PRPF4B                0.023   serine/threonine-protein kinase PRP4K 
MUC17                 0.022   mucin 17 
LOC100170229          0.019   hypothetical protein LOC100170229 
ZRANB2                0.019   zinc finger protein 265 isoform 1 
PPIG                  0.018   peptidylprolyl isomerase G 
ZAN                   0.018   zonadhesin isoform 3 
ZAN                   0.018   zonadhesin isoform 6 
SFRS4                 0.018   splicing factor, arginine/serine-rich 4 
RSRC2                 0.018   arginine/serine-rich coiled-coil 2 isoform a 
RSRC2                 0.017   arginine/serine-rich coiled-coil 2 isoform b 
SFRS12                0.017   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.017   splicing factor, arginine/serine-rich 12 isoform b [...
C1orf63               0.017   hypothetical protein LOC57035 
C2orf16               0.017   hypothetical protein LOC84226 
SFRS11                0.017   splicing factor, arginine/serine-rich 11 
SRRM1                 0.017   serine/arginine repetitive matrix 1 
NKTR                  0.017   natural killer-tumor recognition sequence 
CRKRS                 0.017   Cdc2-related kinase, arginine/serine-rich isoform 2...
CRKRS                 0.017   Cdc2-related kinase, arginine/serine-rich isoform 1...
PHRF1                 0.016   PHD and ring finger domains 1 
LOC100286959          0.016   PREDICTED: hypothetical protein XP_002343921 
PRPF38B               0.016   PRP38 pre-mRNA processing factor 38 (yeast) domain ...
ZRANB2                0.016   zinc finger protein 265 isoform 2 
PRG4                  0.015   proteoglycan 4 isoform D 
PRG4                  0.015   proteoglycan 4 isoform C 
PRG4                  0.015   proteoglycan 4 isoform B 
PRG4                  0.015   proteoglycan 4 isoform A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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