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Search of human proteins with 51479192
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|51479192 ring finger protein 1 [Homo sapiens]
(406 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|51479192 ring finger protein 1 [Homo sapiens] 840 0.0
gi|6005747 ring finger protein 2 [Homo sapiens] 384 e-106
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 62 9e-10
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 62 9e-10
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 62 1e-09
gi|24432032 zinc finger protein 503 [Homo sapiens] 60 3e-09
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 58 1e-08
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 58 2e-08
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 58 2e-08
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 58 2e-08
gi|24586686 voltage-dependent calcium channel gamma-8 subunit [H... 58 2e-08
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 57 2e-08
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 57 2e-08
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 57 2e-08
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 57 3e-08
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 56 5e-08
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 56 5e-08
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 56 5e-08
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 56 5e-08
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 56 5e-08
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 56 5e-08
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 56 5e-08
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 56 5e-08
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 56 5e-08
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 56 5e-08
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 56 5e-08
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 56 5e-08
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 56 5e-08
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 56 7e-08
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 56 7e-08
>gi|51479192 ring finger protein 1 [Homo sapiens]
Length = 406
Score = 840 bits (2169), Expect = 0.0
Identities = 406/406 (100%), Positives = 406/406 (100%)
Query: 1 MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT 60
MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT
Sbjct: 1 MTTPANAQNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMT 60
Query: 61 TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAH 120
TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAH
Sbjct: 61 TKECLHRFCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAH 120
Query: 121 QDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGE 180
QDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGE
Sbjct: 121 QDRVLIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGE 180
Query: 181 GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG 240
GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG
Sbjct: 181 GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG 240
Query: 241 GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLA 300
GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLA
Sbjct: 241 GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLA 300
Query: 301 LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQ 360
LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQ
Sbjct: 301 LRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQ 360
Query: 361 YTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK 406
YTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK
Sbjct: 361 YTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK 406
>gi|6005747 ring finger protein 2 [Homo sapiens]
Length = 336
Score = 384 bits (985), Expect = e-106
Identities = 219/401 (54%), Positives = 256/401 (63%), Gaps = 77/401 (19%)
Query: 8 QNASKTWELSLYELHRTPQEAIMDGTEIAVSPRSLHSELMCPICLDMLKNTMTTKECLHR 67
Q SKTWELSLYEL RTPQEAI DG EI VSPRSLHSELMCPICLDMLKNTMTTKECLHR
Sbjct: 11 QPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHR 70
Query: 68 FCSDCIVTALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSREEYEAHQDRVLIR 127
FC+DCI+TALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSR+EYEAHQ+RVL R
Sbjct: 71 FCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLAR 130
Query: 128 LSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVS 187
+++ +NQQALS SIEEGL++QAM+R QR ++ + G G E GD S
Sbjct: 131 INKHNNQQALSHSIEEGLKIQAMNRLQRGKK--------QQIENGSG--AEDNGDSSHCS 180
Query: 188 SDSA-PDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGP 246
+ S + GP+ KR + S+DSG
Sbjct: 181 NASTHSNQEAGPSNKRTK-----------------------TSDDSGLELDNNNAAMAID 217
Query: 247 PSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE 306
P GA EIELVFRPHP L+EK + QTRY+KT+GNATVDHLSKYLA+R+ALE
Sbjct: 218 PVMDGA-------SEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALE 270
Query: 307 R-RQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQYTIYI 365
R + E+ + +L+ SEKQYTIYI
Sbjct: 271 ELRSKGESNQ-----------------------------------MNLDTASEKQYTIYI 295
Query: 366 APGGGAFTTLNGSLTLELVNEKFWKVSRPLELCYAPTKDPK 406
A G FT LNGS +LELV+EK+WKV++P+EL YAPTK+ K
Sbjct: 296 ATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAPTKEHK 336
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 62.0 bits (149), Expect = 9e-10
Identities = 66/207 (31%), Positives = 79/207 (38%), Gaps = 35/207 (16%)
Query: 154 QRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSV 213
QR R PG + G GEPG+ G S D P GP P G G
Sbjct: 988 QRGERGFPG------LPGPSGEPGKQGAPG--ASGDRGPPGPVGP-PGLTGPAGEPGREG 1038
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AG + GDRG T G G P PPG+P P P G+
Sbjct: 1039 SPGADGPPGRDGAAGVK--GDRGETGAVGAPGAPGPPGSPGPAGPTGK----------QG 1086
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTG---- 327
++GE + +G A + R + EAGEPG G G TG
Sbjct: 1087 DRGEAGAQGPMGPSGPAGARGIQGPQG-----PRGDKGEAGEPGERGLKGHRGFTGLQGL 1141
Query: 328 -GPDGCGGEGGGAG--GGDGPEEPALP 351
GP G G+ G +G G GP P P
Sbjct: 1142 PGPPGPSGDQGASGPAGPSGPRGPPGP 1168
Score = 54.3 bits (129), Expect = 2e-07
Identities = 57/192 (29%), Positives = 70/192 (36%), Gaps = 43/192 (22%)
Query: 170 SGGEGEPGEGEGDGEDVSSDS-APDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAG 228
+GG G PG GE + + P+ A GP + P G+ G + +G GT G+ G G
Sbjct: 362 AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE-PGTPGSPGPAGASGNPGTDGIPGAKG 420
Query: 229 SEDSGDRGGTLG-GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTT 287
S + G G G GPP P GA P P G+ T
Sbjct: 421 SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQ-------------------------T 455
Query: 288 GNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDGCGGEGGGAGGGD 343
G IA + +Q GEPG GP G G G G GE GG G
Sbjct: 456 GEP-----------GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIG 504
Query: 344 GPEEPALPSLEG 355
P E P G
Sbjct: 505 PPGERGAPGNRG 516
Score = 54.3 bits (129), Expect = 2e-07
Identities = 58/202 (28%), Positives = 69/202 (34%), Gaps = 14/202 (6%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
GS + G G PG DG + S + P A GP + G G + + G
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDR 767
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGA------PSPPEPGGEIELVFRPHPLLVE 274
G VG G GG G +GPP P GA PP P G P E
Sbjct: 768 GDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPG----E 823
Query: 275 KGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGCG 333
+GE G D + A E Q+ +AG PG G GA GP G
Sbjct: 824 RGETGPPGPAGFAGPPGAD--GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVT 881
Query: 334 GEGGGAGGGDGPEEPALPSLEG 355
G G G P P G
Sbjct: 882 GPKGARGAQGPPGATGFPGAAG 903
Score = 53.1 bits (126), Expect = 4e-07
Identities = 57/201 (28%), Positives = 69/201 (34%), Gaps = 37/201 (18%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG D ++G G PG +GE + P G A R GA G TG G
Sbjct: 779 PGKDGGRGLTGPIGPPGPAGANGE--KGEVGPPGPAGSAGAR----GAPGERGETGPPGP 832
Query: 221 GGVGGGAGSE-------DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G++ + G+ G G GP P GAP P P G V P
Sbjct: 833 AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTG----VTGPKGARG 888
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
+G T + G G PG PG G S GP G
Sbjct: 889 AQGPPGATGFPGAAGRV-----------------GPPGSNGNPGPPGPPGPSGKDGPKGA 931
Query: 333 GGEGG--GAGGGDGPEEPALP 351
G+ G G G G + PA P
Sbjct: 932 RGDSGPPGRAGEPGLQGPAGP 952
Score = 50.4 bits (119), Expect = 3e-06
Identities = 65/209 (31%), Positives = 74/209 (35%), Gaps = 38/209 (18%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGG 217
R PG D ++G +G PGE G + P A G P RP G G+ TG
Sbjct: 515 RGFPGQDG---LAGPKGAPGERGPSGL-----AGPKGANGD-PGRPGEPGLPGARGLTGR 565
Query: 218 GGTGGVGG-----GAGSEDS-----GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR 267
G G G GA ED G +G G +G P P GA P GE L
Sbjct: 566 PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA 625
Query: 268 PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDT 326
P L G+ +T G A E GE G PG G
Sbjct: 626 P-GLRGLPGKDGETGAAGPPGPA-----------------GPAGERGEQGAPGPSGFQGL 667
Query: 327 GGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
GP G GEGG G P E P L G
Sbjct: 668 PGPPGPPGEGGKPGDQGVPGEAGAPGLVG 696
Score = 48.9 bits (115), Expect = 8e-06
Identities = 54/192 (28%), Positives = 65/192 (33%), Gaps = 29/192 (15%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G G PGE G+D P A GP + G G + G
Sbjct: 938 PGRAGEPGLQGPAGPPGEKGEPGDD-----GPSGAEGPPGPQGLAGQRGIVGLPGQRGER 992
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G G S + G +G G GPP P G P P GE P
Sbjct: 993 GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP------------ 1040
Query: 281 TRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGCGGEGG-- 337
G D A + +R + G PG PG G+ GP G G+ G
Sbjct: 1041 ----GADGPPGRDG-----AAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEA 1091
Query: 338 GAGGGDGPEEPA 349
GA G GP PA
Sbjct: 1092 GAQGPMGPSGPA 1103
Score = 48.5 bits (114), Expect = 1e-05
Identities = 58/200 (29%), Positives = 67/200 (33%), Gaps = 39/200 (19%)
Query: 158 RPIPGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTG 216
R +PG D T +G G G GE + S PGP P P GG G G
Sbjct: 629 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP-PGPPGEGGKPGDQGVPG 687
Query: 217 GGGTGGVGGGAGSED-SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 275
G G+ G G G+RG G GP PG P P G
Sbjct: 688 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKG--------------- 732
Query: 276 GEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDG 331
+G A L + E G G GP G D G GP+G
Sbjct: 733 ----------ASGPAGPPGAQGPPGL-----QGMPGERGAAGIAGPKGDRGDVGEKGPEG 777
Query: 332 CGGEGGGAG--GGDGPEEPA 349
G+ GG G G GP PA
Sbjct: 778 APGKDGGRGLTGPIGPPGPA 797
Score = 47.4 bits (111), Expect = 2e-05
Identities = 61/210 (29%), Positives = 70/210 (33%), Gaps = 39/210 (18%)
Query: 168 TMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGA 227
T SG G G+ +G+ D+ P PGP G G G G G G
Sbjct: 95 TASGQPGPKGQ-KGEPGDIKDIVGPKGPPGPQ-------GPAGEQGPRGDRGDKGEKGAP 146
Query: 228 GSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR--------PHPLLVEKGEYC 279
G GT G GPP PPG P PP GG L V +G
Sbjct: 147 GPRGRDGEPGT--PGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMG 204
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG-----GPGGGASDTG--GPDGC 332
G A + + E GEPG GP G G G DG
Sbjct: 205 PMGPRGPPGPAGAPGPQGF--------QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGE 256
Query: 333 GGEGGGAG--GGDGPEE----PALPSLEGV 356
G+ G AG G GP+ P P L GV
Sbjct: 257 AGKPGKAGERGPPGPQGARGFPGTPGLPGV 286
Score = 46.2 bits (108), Expect = 5e-05
Identities = 41/116 (35%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGE----------DVSSDSAPDSAPGPA-PKRPRG- 205
R I G G GEPGE G S A GPA P PRG
Sbjct: 1106 RGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1165
Query: 206 -GGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG-GGTLGPPSPPGAPSPPEPG 259
G G S G G G+ G G R G G G G P PPG P PP PG
Sbjct: 1166 PGPVGPS----GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPG 1217
Score = 45.4 bits (106), Expect = 9e-05
Identities = 57/202 (28%), Positives = 71/202 (35%), Gaps = 38/202 (18%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGG 219
PG+ + +G G PG +G S AP A P PRG G G++ G G
Sbjct: 395 PGTPGSPGPAGASGNPGT-DGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKG 453
Query: 220 TGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYC 279
G G AG + G++G G GP P GAP P G+ +GE
Sbjct: 454 QTGEPGIAGFK--GEQGPK---GEPGPAGPQGAPGPAGEEGK----------RGARGEPG 498
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGGPDGCGGE 335
+ G ER G PG G GA GP G G
Sbjct: 499 GVGPIGPPG-----------------ERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 541
Query: 336 GGGAGGGDGPEEPALPSLEGVS 357
G G P EP LP G++
Sbjct: 542 KGANGDPGRPGEPGLPGARGLT 563
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/207 (28%), Positives = 67/207 (32%), Gaps = 40/207 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGP-APKRPRG-------GGAGGS 211
PG+D G G PG G P A GP PK G G G
Sbjct: 410 PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGP 469
Query: 212 SVGTGGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP 270
G G G G AG E G RG G G +GPP GAP G+ L P
Sbjct: 470 KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLA-GPKG 528
Query: 271 LLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGG 328
E+G +A + + G PG PG G TG
Sbjct: 529 APGERG-----------------------PSGLAGPKGANGDPGRPGEPGLPGARGLTGR 565
Query: 329 PDGCGGEG----GGAGGGDGPEEPALP 351
P G +G GA G DG P P
Sbjct: 566 PGDAGPQGKVGPSGAPGEDGRPGPPGP 592
Score = 42.4 bits (98), Expect = 8e-04
Identities = 61/218 (27%), Positives = 76/218 (34%), Gaps = 43/218 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKR-PRGGGAGGSSVGTGGGG 219
PG+ +G G PG G P PGP+ K P+G A G S G G
Sbjct: 893 PGATGFPGAAGRVGPPGSNGNPG--------PPGPPGPSGKDGPKG--ARGDSGPPGRAG 942
Query: 220 TGGVGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEY 278
G+ G AG + G+ G G GPP P G G+ +V P ++GE
Sbjct: 943 EPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL------AGQRGIVGLPG----QRGER 992
Query: 279 CQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGG--------GASDTGG 328
+G K A + +R G PG GP G GA G
Sbjct: 993 GFPGLPGPSGEP-----GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 1047
Query: 329 PDGCG------GEGGGAGGGDGPEEPALPSLEGVSEKQ 360
DG GE G G P P P G + KQ
Sbjct: 1048 RDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1085
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGGGAGGSSVGTGG-- 217
PGS +G +G+ GE G S P A G P+ PRG G G
Sbjct: 1073 PGSPGPAGPTGKQGDRGEAGAQGP--MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLK 1130
Query: 218 ---GGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
G TG G SGD+G + G GP P G P P P G+
Sbjct: 1131 GHRGFTGLQGLPGPPGPSGDQGAS---GPAGPSGPRGPPGPVGPSGK 1174
Score = 41.6 bits (96), Expect = 0.001
Identities = 62/224 (27%), Positives = 73/224 (32%), Gaps = 44/224 (19%)
Query: 158 RPIPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDS-APDSAPGPAPKRPRG------- 205
R PG+ + G G PG +GE V +S +P P P PRG
Sbjct: 275 RGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGR 334
Query: 206 ---GGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGE 261
GA G+ G G G G G G G G GP G P GE
Sbjct: 335 TGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 394
Query: 262 IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P P +GN D + A AG PG PG
Sbjct: 395 PGTPGSPGP-------------AGASGNPGTDGIPGAKGSAGA-----PGIAGAPGFPGP 436
Query: 321 ------GGASDTGGPDGCGGEGGGAG--GGDGPE-EPALPSLEG 355
GA+ GP G GE G AG G GP+ EP +G
Sbjct: 437 RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG 480
Score = 40.4 bits (93), Expect = 0.003
Identities = 62/219 (28%), Positives = 71/219 (32%), Gaps = 33/219 (15%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTG 221
G Q M G G G G P APGP + G G V G G
Sbjct: 192 GGAQLGVMQGPMGPMGPRGPPG--------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRG 243
Query: 222 GVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPS-PPEPGGEIELVFRPHP-LLVEKGEYC 279
G D G+ G G GPP P GA P PG R +P L KGE
Sbjct: 244 PPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAG 303
Query: 280 QTRYVKTTGNATVDHLSKYLALR-IALERRQQQEAGE-----------PGGPGGGASDTG 327
+G+ + + R + ER + AG P GP G G
Sbjct: 304 APGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 363
Query: 328 GP-----DGCGGEGGGAG-----GGDGPE-EPALPSLEG 355
GP G GE G G G GP EP P G
Sbjct: 364 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 402
Score = 40.0 bits (92), Expect = 0.004
Identities = 53/206 (25%), Positives = 65/206 (31%), Gaps = 55/206 (26%)
Query: 154 QRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG----GAG 209
+R + PG + G G PGEG G+ P A P PRG G
Sbjct: 652 ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ----GVPGEAGAPGLVGPRGERGFPGER 707
Query: 210 GSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPH 269
GS G G G+ G G++ G +G + G G PPG P G
Sbjct: 708 GSPGAQGLQGPRGLPGTPGTD--GPKGASGPAGPPGAQGPPGLQGMPGERG--------- 756
Query: 270 PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG-- 327
A IA + + + GE G G D G
Sbjct: 757 ------------------------------AAGIAGPKGDRGDVGEKGPEGAPGKDGGRG 786
Query: 328 --GPDGCGGEGGGAG--GGDGPEEPA 349
GP G G G G G GP PA
Sbjct: 787 LTGPIGPPGPAGANGEKGEVGPPGPA 812
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 62.0 bits (149), Expect = 9e-10
Identities = 66/207 (31%), Positives = 79/207 (38%), Gaps = 35/207 (16%)
Query: 154 QRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSV 213
QR R PG + G GEPG+ G S D P GP P G G
Sbjct: 919 QRGERGFPG------LPGPSGEPGKQGAPG--ASGDRGPPGPVGP-PGLTGPAGEPGREG 969
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AG + GDRG T G G P PPG+P P P G+
Sbjct: 970 SPGADGPPGRDGAAGVK--GDRGETGAVGAPGAPGPPGSPGPAGPTGK----------QG 1017
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTG---- 327
++GE + +G A + R + EAGEPG G G TG
Sbjct: 1018 DRGEAGAQGPMGPSGPAGARGIQGPQG-----PRGDKGEAGEPGERGLKGHRGFTGLQGL 1072
Query: 328 -GPDGCGGEGGGAG--GGDGPEEPALP 351
GP G G+ G +G G GP P P
Sbjct: 1073 PGPPGPSGDQGASGPAGPSGPRGPPGP 1099
Score = 54.3 bits (129), Expect = 2e-07
Identities = 57/192 (29%), Positives = 70/192 (36%), Gaps = 43/192 (22%)
Query: 170 SGGEGEPGEGEGDGEDVSSDS-APDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAG 228
+GG G PG GE + + P+ A GP + P G+ G + +G GT G+ G G
Sbjct: 293 AGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE-PGTPGSPGPAGASGNPGTDGIPGAKG 351
Query: 229 SEDSGDRGGTLG-GGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTT 287
S + G G G GPP P GA P P G+ T
Sbjct: 352 SAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQ-------------------------T 386
Query: 288 GNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDGCGGEGGGAGGGD 343
G IA + +Q GEPG GP G G G G GE GG G
Sbjct: 387 GEP-----------GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIG 435
Query: 344 GPEEPALPSLEG 355
P E P G
Sbjct: 436 PPGERGAPGNRG 447
Score = 54.3 bits (129), Expect = 2e-07
Identities = 58/202 (28%), Positives = 69/202 (34%), Gaps = 14/202 (6%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
GS + G G PG DG + S + P A GP + G G + + G
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDR 698
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGA------PSPPEPGGEIELVFRPHPLLVE 274
G VG G GG G +GPP P GA PP P G P E
Sbjct: 699 GDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPG----E 754
Query: 275 KGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGCG 333
+GE G D + A E Q+ +AG PG G GA GP G
Sbjct: 755 RGETGPPGPAGFAGPPGAD--GQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVT 812
Query: 334 GEGGGAGGGDGPEEPALPSLEG 355
G G G P P G
Sbjct: 813 GPKGARGAQGPPGATGFPGAAG 834
Score = 53.1 bits (126), Expect = 4e-07
Identities = 57/201 (28%), Positives = 69/201 (34%), Gaps = 37/201 (18%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG D ++G G PG +GE + P G A R GA G TG G
Sbjct: 710 PGKDGGRGLTGPIGPPGPAGANGE--KGEVGPPGPAGSAGAR----GAPGERGETGPPGP 763
Query: 221 GGVGGGAGSE-------DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G++ + G+ G G GP P GAP P P G V P
Sbjct: 764 AGFAGPPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTG----VTGPKGARG 819
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
+G T + G G PG PG G S GP G
Sbjct: 820 AQGPPGATGFPGAAGRV-----------------GPPGSNGNPGPPGPPGPSGKDGPKGA 862
Query: 333 GGEGG--GAGGGDGPEEPALP 351
G+ G G G G + PA P
Sbjct: 863 RGDSGPPGRAGEPGLQGPAGP 883
Score = 50.4 bits (119), Expect = 3e-06
Identities = 65/209 (31%), Positives = 74/209 (35%), Gaps = 38/209 (18%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGG 217
R PG D ++G +G PGE G + P A G P RP G G+ TG
Sbjct: 446 RGFPGQDG---LAGPKGAPGERGPSGL-----AGPKGANGD-PGRPGEPGLPGARGLTGR 496
Query: 218 GGTGGVGG-----GAGSEDS-----GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR 267
G G G GA ED G +G G +G P P GA P GE L
Sbjct: 497 PGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA 556
Query: 268 PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDT 326
P L G+ +T G A E GE G PG G
Sbjct: 557 P-GLRGLPGKDGETGAAGPPGPA-----------------GPAGERGEQGAPGPSGFQGL 598
Query: 327 GGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
GP G GEGG G P E P L G
Sbjct: 599 PGPPGPPGEGGKPGDQGVPGEAGAPGLVG 627
Score = 48.9 bits (115), Expect = 8e-06
Identities = 54/192 (28%), Positives = 65/192 (33%), Gaps = 29/192 (15%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G G PGE G+D P A GP + G G + G
Sbjct: 869 PGRAGEPGLQGPAGPPGEKGEPGDD-----GPSGAEGPPGPQGLAGQRGIVGLPGQRGER 923
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G G S + G +G G GPP P G P P GE P
Sbjct: 924 GFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSP------------ 971
Query: 281 TRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGCGGEGG-- 337
G D A + +R + G PG PG G+ GP G G+ G
Sbjct: 972 ----GADGPPGRDG-----AAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEA 1022
Query: 338 GAGGGDGPEEPA 349
GA G GP PA
Sbjct: 1023 GAQGPMGPSGPA 1034
Score = 48.5 bits (114), Expect = 1e-05
Identities = 58/200 (29%), Positives = 67/200 (33%), Gaps = 39/200 (19%)
Query: 158 RPIPGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTG 216
R +PG D T +G G G GE + S PGP P P GG G G
Sbjct: 560 RGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGP-PGPPGEGGKPGDQGVPG 618
Query: 217 GGGTGGVGGGAGSED-SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 275
G G+ G G G+RG G GP PG P P G
Sbjct: 619 EAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKG--------------- 663
Query: 276 GEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDG 331
+G A L + E G G GP G D G GP+G
Sbjct: 664 ----------ASGPAGPPGAQGPPGL-----QGMPGERGAAGIAGPKGDRGDVGEKGPEG 708
Query: 332 CGGEGGGAG--GGDGPEEPA 349
G+ GG G G GP PA
Sbjct: 709 APGKDGGRGLTGPIGPPGPA 728
Score = 48.1 bits (113), Expect = 1e-05
Identities = 72/253 (28%), Positives = 83/253 (32%), Gaps = 57/253 (22%)
Query: 125 LIRLSRLHNQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGE 184
+IRL L+ + LR Q Q VR+P P G +GEPG
Sbjct: 1 MIRLGAPQTLVLLTLLVAAVLRCQG----QDVRQPGP--------KGQKGEPG------- 41
Query: 185 DVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTL 244
D+ P PGP G G G G G G G GT G
Sbjct: 42 DIKDIVGPKGPPGPQ-------GPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNP-- 92
Query: 245 GPPSPPGAPSPPEPGGEIELVFR--------PHPLLVEKGEYCQTRYVKTTGNATVDHLS 296
GPP PPG P PP GG L V +G G A
Sbjct: 93 GPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQ 152
Query: 297 KYLALRIALERRQQQEAGEPG-----GPGGGASDTG--GPDGCGGEGGGAG--GGDGPEE 347
+ + E GEPG GP G G G DG G+ G AG G GP+
Sbjct: 153 GF--------QGNPGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQG 204
Query: 348 ----PALPSLEGV 356
P P L GV
Sbjct: 205 ARGFPGTPGLPGV 217
Score = 46.2 bits (108), Expect = 5e-05
Identities = 41/116 (35%), Positives = 42/116 (36%), Gaps = 18/116 (15%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGE----------DVSSDSAPDSAPGPA-PKRPRG- 205
R I G G GEPGE G S A GPA P PRG
Sbjct: 1037 RGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGP 1096
Query: 206 -GGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG-GGTLGPPSPPGAPSPPEPG 259
G G S G G G+ G G R G G G G P PPG P PP PG
Sbjct: 1097 PGPVGPS----GKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPG 1148
Score = 45.4 bits (106), Expect = 9e-05
Identities = 57/202 (28%), Positives = 71/202 (35%), Gaps = 38/202 (18%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGG 219
PG+ + +G G PG +G S AP A P PRG G G++ G G
Sbjct: 326 PGTPGSPGPAGASGNPGT-DGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKG 384
Query: 220 TGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYC 279
G G AG + G++G G GP P GAP P G+ +GE
Sbjct: 385 QTGEPGIAGFK--GEQGPK---GEPGPAGPQGAPGPAGEEGK----------RGARGEPG 429
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGGPDGCGGE 335
+ G ER G PG G GA GP G G
Sbjct: 430 GVGPIGPPG-----------------ERGAPGNRGFPGQDGLAGPKGAPGERGPSGLAGP 472
Query: 336 GGGAGGGDGPEEPALPSLEGVS 357
G G P EP LP G++
Sbjct: 473 KGANGDPGRPGEPGLPGARGLT 494
Score = 43.5 bits (101), Expect = 3e-04
Identities = 59/207 (28%), Positives = 67/207 (32%), Gaps = 40/207 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGP-APKRPRG-------GGAGGS 211
PG+D G G PG G P A GP PK G G G
Sbjct: 341 PGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGP 400
Query: 212 SVGTGGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP 270
G G G G AG E G RG G G +GPP GAP G+ L P
Sbjct: 401 KGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLA-GPKG 459
Query: 271 LLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGG 328
E+G +A + + G PG PG G TG
Sbjct: 460 APGERG-----------------------PSGLAGPKGANGDPGRPGEPGLPGARGLTGR 496
Query: 329 PDGCGGEG----GGAGGGDGPEEPALP 351
P G +G GA G DG P P
Sbjct: 497 PGDAGPQGKVGPSGAPGEDGRPGPPGP 523
Score = 42.4 bits (98), Expect = 8e-04
Identities = 61/218 (27%), Positives = 76/218 (34%), Gaps = 43/218 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKR-PRGGGAGGSSVGTGGGG 219
PG+ +G G PG G P PGP+ K P+G A G S G G
Sbjct: 824 PGATGFPGAAGRVGPPGSNGNPG--------PPGPPGPSGKDGPKG--ARGDSGPPGRAG 873
Query: 220 TGGVGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEY 278
G+ G AG + G+ G G GPP P G G+ +V P ++GE
Sbjct: 874 EPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGL------AGQRGIVGLPG----QRGER 923
Query: 279 CQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGG--------GASDTGG 328
+G K A + +R G PG GP G GA G
Sbjct: 924 GFPGLPGPSGEP-----GKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPG 978
Query: 329 PDGCG------GEGGGAGGGDGPEEPALPSLEGVSEKQ 360
DG GE G G P P P G + KQ
Sbjct: 979 RDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQ 1016
Score = 42.0 bits (97), Expect = 0.001
Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGGGAGGSSVGTGG-- 217
PGS +G +G+ GE G S P A G P+ PRG G G
Sbjct: 1004 PGSPGPAGPTGKQGDRGEAGAQGP--MGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLK 1061
Query: 218 ---GGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
G TG G SGD+G + G GP P G P P P G+
Sbjct: 1062 GHRGFTGLQGLPGPPGPSGDQGAS---GPAGPSGPRGPPGPVGPSGK 1105
Score = 41.6 bits (96), Expect = 0.001
Identities = 62/224 (27%), Positives = 73/224 (32%), Gaps = 44/224 (19%)
Query: 158 RPIPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDS-APDSAPGPAPKRPRG------- 205
R PG+ + G G PG +GE V +S +P P P PRG
Sbjct: 206 RGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERGR 265
Query: 206 ---GGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGE 261
GA G+ G G G G G G G G GP G P GE
Sbjct: 266 TGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGE 325
Query: 262 IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P P +GN D + A AG PG PG
Sbjct: 326 PGTPGSPGP-------------AGASGNPGTDGIPGAKGSAGA-----PGIAGAPGFPGP 367
Query: 321 ------GGASDTGGPDGCGGEGGGAG--GGDGPE-EPALPSLEG 355
GA+ GP G GE G AG G GP+ EP +G
Sbjct: 368 RGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQG 411
Score = 40.4 bits (93), Expect = 0.003
Identities = 62/219 (28%), Positives = 71/219 (32%), Gaps = 33/219 (15%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTG 221
G Q M G G G G P APGP + G G V G G
Sbjct: 123 GGAQLGVMQGPMGPMGPRGPPG--------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRG 174
Query: 222 GVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPS-PPEPGGEIELVFRPHP-LLVEKGEYC 279
G D G+ G G GPP P GA P PG R +P L KGE
Sbjct: 175 PPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAG 234
Query: 280 QTRYVKTTGNATVDHLSKYLALR-IALERRQQQEAGE-----------PGGPGGGASDTG 327
+G+ + + R + ER + AG P GP G G
Sbjct: 235 APGVKGESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAG 294
Query: 328 GP-----DGCGGEGGGAG-----GGDGPE-EPALPSLEG 355
GP G GE G G G GP EP P G
Sbjct: 295 GPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPG 333
Score = 40.0 bits (92), Expect = 0.004
Identities = 53/206 (25%), Positives = 65/206 (31%), Gaps = 55/206 (26%)
Query: 154 QRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG----GAG 209
+R + PG + G G PGEG G+ P A P PRG G
Sbjct: 583 ERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQ----GVPGEAGAPGLVGPRGERGFPGER 638
Query: 210 GSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPH 269
GS G G G+ G G++ G +G + G G PPG P G
Sbjct: 639 GSPGAQGLQGPRGLPGTPGTD--GPKGASGPAGPPGAQGPPGLQGMPGERG--------- 687
Query: 270 PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG-- 327
A IA + + + GE G G D G
Sbjct: 688 ------------------------------AAGIAGPKGDRGDVGEKGPEGAPGKDGGRG 717
Query: 328 --GPDGCGGEGGGAG--GGDGPEEPA 349
GP G G G G G GP PA
Sbjct: 718 LTGPIGPPGPAGANGEKGEVGPPGPA 743
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 61.6 bits (148), Expect = 1e-09
Identities = 65/208 (31%), Positives = 82/208 (39%), Gaps = 32/208 (15%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVGTGGGG 219
PGSD + G +G PG G+GD + S AP + P P P G G G +G G
Sbjct: 1016 PGSDG---LPGRDGSPG-GKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAG 1071
Query: 220 TGGVGGGAGSE-------------DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVF 266
G G AGS ++G+RG G G P PGAP P P G+ +
Sbjct: 1072 PAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIG 1131
Query: 267 RPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLA-LRIALERRQQQEAGEPGGPG-GGAS 324
P P +G V +G D S + + R + E G G PG G
Sbjct: 1132 SPGP-AGPRGP------VGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQP 1184
Query: 325 DTGGPDG-----CGGEGGGAGGGDGPEE 347
GP G CGG G A G G E+
Sbjct: 1185 GPPGPPGAPGPCCGGVGAAAIAGIGGEK 1212
Score = 60.5 bits (145), Expect = 3e-09
Identities = 73/220 (33%), Positives = 81/220 (36%), Gaps = 44/220 (20%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP-APKRPRGG----GAGGSSVGT 215
PG GG G PG GE D PG P+ P G G G
Sbjct: 722 PGLQGMPGERGGLGSPGPKGDKGEP--GGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDK 779
Query: 216 GGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPP----EPGGEIELVFRPHP 270
G GG G+ G AG S G+RG T GPP P G P P EPGG+ E R P
Sbjct: 780 GEGGAPGLPGIAGPRGSPGERGET------GPPGPAGFPGAPGQNGEPGGKGE---RGAP 830
Query: 271 LLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG----GASDT 326
EKGE G + ++ E G PGGPG GA
Sbjct: 831 --GEKGEGGPPGVAGPPGGSGPAGPPGPQGVK--------GERGSPGGPGAAGFPGARGL 880
Query: 327 GGPDGCGGEGG-----GAGGGDGPEEPA----LPSLEGVS 357
GP G G G G+ G DGP PA P GVS
Sbjct: 881 PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVS 920
Score = 55.1 bits (131), Expect = 1e-07
Identities = 66/240 (27%), Positives = 78/240 (32%), Gaps = 56/240 (23%)
Query: 142 EEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGE----------GEGDGEDVSSDSA 191
+ G + + R +R IPG G +G PGE GE +
Sbjct: 436 KNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAG 495
Query: 192 PDSAPGP-APKRPRGG-GAGGSSVGTGGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPS 248
P+ PG P RG G G G G GV GG G G GG G GPP
Sbjct: 496 PNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPG 555
Query: 249 P------PGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALR 302
PG P P P G+ ++ P P GN
Sbjct: 556 SQGESGRPGPPGPSGPRGQPGVMGFPGP----------------KGNDGAP--------- 590
Query: 303 IALERRQQQEAGEPGGPG-----GGASDTG--GPDGCGGEGGGAGGGDGPEEPALPSLEG 355
+ E G PGGPG G +TG GP G G GG G P L L G
Sbjct: 591 -----GKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPG 645
Score = 54.3 bits (129), Expect = 2e-07
Identities = 62/227 (27%), Positives = 77/227 (33%), Gaps = 54/227 (23%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAG--GSSVGTGGG 218
PG D G G PG G G D PGP + G G G S G
Sbjct: 524 PGRDGVPGGPGMRGMPGSPGGPGSD--------GKPGPPGSQGESGRPGPPGPSGPRGQP 575
Query: 219 GTGGVGGGAGSEDS----GDRGGTLGGGTLGPPS------PPGAPSPPEPGGEIELVFRP 268
G G G G++ + G+RGG G G GPP P G P P PGG+ P
Sbjct: 576 GVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPP 635
Query: 269 HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG------- 321
P ++ + TG ++ E + +AG PG PGG
Sbjct: 636 GPQGLQG--------LPGTGGPPGENGKPG-------EPGPKGDAGAPGAPGGKGDAGAP 680
Query: 322 ------------GASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGV 356
G GP G G G AG P P L+G+
Sbjct: 681 GERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGM 727
Score = 52.4 bits (124), Expect = 7e-07
Identities = 57/202 (28%), Positives = 66/202 (32%), Gaps = 47/202 (23%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAP--DSAPGPAPKRPRGGGAGGSSVGTGGG 218
PG ++G GEPG G SD P D +PG R G G G
Sbjct: 995 PGPQGLPGLAGTAGEPGRDGNPG----SDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPG 1050
Query: 219 GTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEY 278
G VG S D G+ G G GP GAP P P G +KGE
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRG-------------DKGET 1097
Query: 279 CQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG-GASDTGGPDGCGGEGG 337
+ G+ G PG PG G+ G G G G
Sbjct: 1098 GERGAAGIKGH-----------------------RGFPGNPGAPGSPGPAGQQGAIGSPG 1134
Query: 338 GAG--GGDGPEEPALPSLEGVS 357
AG G GP P P +G S
Sbjct: 1135 PAGPRGPVGPSGP--PGKDGTS 1154
Score = 51.6 bits (122), Expect = 1e-06
Identities = 73/243 (30%), Positives = 86/243 (35%), Gaps = 64/243 (26%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA------PKRPRGG-GAGGSSV 213
PG +G G PG G+GD P A P P P GG GA G
Sbjct: 656 PGEPGPKGDAGAPGAPG-GKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPG 714
Query: 214 GTGGGGT----------GGVGGGAGSEDSGDRGGTLGGGTLG---PPSPPGAPSPPEPGG 260
G GT GG+G D G+ GG G G P P G PP P G
Sbjct: 715 PPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAG 774
Query: 261 EIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ----EAGEP 316
+ +KGE G A L R + R + AG P
Sbjct: 775 QPG----------DKGE----------GGA--PGLPGIAGPRGSPGERGETGPPGPAGFP 812
Query: 317 GGPG-----GGASDTGGPDGCGGEGG-----GAGGGDGPEEPALPSLEGVSEKQYTIYIA 366
G PG GG + G P G GEGG G GG GP P P +GV ++ +
Sbjct: 813 GAPGQNGEPGGKGERGAP-GEKGEGGPPGVAGPPGGSGPAGP--PGPQGVKGERG----S 865
Query: 367 PGG 369
PGG
Sbjct: 866 PGG 868
Score = 50.4 bits (119), Expect = 3e-06
Identities = 58/189 (30%), Positives = 65/189 (34%), Gaps = 9/189 (4%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G G PG G D + S D PGP P P G GS G G G G G+
Sbjct: 309 GRPGLPGAAGARGNDGARGS--DGQPGP-PGPPGTAGFPGSPGAKGEVGPAGSPGSNGAP 365
Query: 231 DSGDRGGTLG-GGTLGPPSPPGAPSPPEPGGEIELVFRPHP--LLVEKGEYCQTRYVKTT 287
G G G GPP PPG P GE+ P L+ +G
Sbjct: 366 GQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP 425
Query: 288 G-NATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPE 346
G K A R ++ EAG PG PG D G DG GE G G
Sbjct: 426 GLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGED--GKDGSPGEPGANGLPGAAG 483
Query: 347 EPALPSLEG 355
E P G
Sbjct: 484 ERGAPGFRG 492
Score = 50.4 bits (119), Expect = 3e-06
Identities = 58/203 (28%), Positives = 71/203 (34%), Gaps = 49/203 (24%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-----GAGGSSVGTG 216
G++ + GG GEPG+ GE PGP +R G GA G G
Sbjct: 420 GANGAPGLRGGAGEPGKNGAKGE-----------PGPRGERGEAGIPGVPGAKGEDGKDG 468
Query: 217 GGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKG 276
G G G G+ +G+RG G GP P G P P G E+G
Sbjct: 469 SPGEPGANGLPGA--AGERGAP---GFRGPAGPNGIPGEKGPAG-------------ERG 510
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASD-TGGPDGCGGE 335
G D + +R G PG PGG SD GP G GE
Sbjct: 511 APGPAGPRGAAGEPGRDGVPGGPGMR-----------GMPGSPGGPGSDGKPGPPGSQGE 559
Query: 336 GG--GAGGGDGPE-EPALPSLEG 355
G G G GP +P + G
Sbjct: 560 SGRPGPPGPSGPRGQPGVMGFPG 582
Score = 47.0 bits (110), Expect = 3e-05
Identities = 61/221 (27%), Positives = 69/221 (31%), Gaps = 42/221 (19%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGED----VSSDSAPDSAPGP-----APKRPRGGGA 208
R PG G G PG +G S D PGP AP P G
Sbjct: 863 RGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922
Query: 209 GGSSVGTGGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR 267
G + G G+ G G G+ G G T G GPP PG P P G +
Sbjct: 923 KGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGK 982
Query: 268 P--HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASD 325
P + L E+G G AGEPG G SD
Sbjct: 983 PGANGLSGERGPPGPQGLPGLAGT-----------------------AGEPGRDGNPGSD 1019
Query: 326 -----TGGPDGCG--GEGGGAGGGDGPEEPALPSLEGVSEK 359
G P G G GE G G P P P G + K
Sbjct: 1020 GLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGK 1060
Score = 45.4 bits (106), Expect = 9e-05
Identities = 56/198 (28%), Positives = 66/198 (33%), Gaps = 30/198 (15%)
Query: 169 MSGGEGEPG----EGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVG 224
M G G PG +GE + S PGP P G G G G+ G+
Sbjct: 964 MPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGL-PGLAGTAGEPGRDGNPGSDGLP 1022
Query: 225 GGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRY 283
G GS GDRG G G P PG P P P G+ ++GE
Sbjct: 1023 GRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSG----------DRGESGPAGP 1072
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--------GGASDTGGPDGCGGE 335
G A A R + E GE G G G G P G +
Sbjct: 1073 AGAPGPA-----GSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQ 1127
Query: 336 GG-GAGGGDGPEEPALPS 352
G G+ G GP P PS
Sbjct: 1128 GAIGSPGPAGPRGPVGPS 1145
Score = 44.3 bits (103), Expect = 2e-04
Identities = 69/239 (28%), Positives = 80/239 (33%), Gaps = 53/239 (22%)
Query: 151 HRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA--PKRPRGGGA 208
HR R G + G G PGE G P APG P P GA
Sbjct: 265 HRGFDGRNGEKGETGAPGLKGENGLPGENGAPGP-----MGPRGAPGERGRPGLPGAAGA 319
Query: 209 GGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP----EPG--GEI 262
G+ G G G G G+ +G G G +GP PG+ P EPG G
Sbjct: 320 RGNDGARGSDGQPGPPGPPGT--AGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHA 377
Query: 263 ELVFRPHPLLVE-----KGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG 317
P P + KGE G A + + R AG G
Sbjct: 378 GAQGPPGPPGINGSPGGKGE---------MGPAGIPGAPGLMG-----ARGPPGPAGANG 423
Query: 318 GPG--GGASDTG--------GPDGCGGEGG-----GAGGGDG----PEEPALPSLEGVS 357
PG GGA + G GP G GE G GA G DG P EP L G +
Sbjct: 424 APGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAA 482
Score = 42.0 bits (97), Expect = 0.001
Identities = 59/209 (28%), Positives = 70/209 (33%), Gaps = 19/209 (9%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDS-APGPAPKRPRGGGAGGSSVG---- 214
IPG + + G G PG G S + P + +P + G A G G
Sbjct: 116 IPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGP 175
Query: 215 ------TGGGGTGGVGGGAGSED-SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR 267
G GT G G GS G G G GPP PPGA P P G+ R
Sbjct: 176 AGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGR 235
Query: 268 PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDT 326
P GE G A + R + R E GE G PG G +
Sbjct: 236 PG----RPGERGLPGPPGIKGPAGIPGFPGMKGHR-GFDGR-NGEKGETGAPGLKGENGL 289
Query: 327 GGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G +G G G G P LP G
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAG 318
Score = 40.4 bits (93), Expect = 0.003
Identities = 53/194 (27%), Positives = 62/194 (31%), Gaps = 63/194 (32%)
Query: 190 SAPDSAP-GPAPKRPRGG-GAGGSSVGTGGGGTGGVGGGAGSE----------------- 230
+AP P G P+ P+G G G G G G G GS
Sbjct: 93 TAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYS 152
Query: 231 ---DSGD-RGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKT 286
DS D + G GG G P P G P PP P G T
Sbjct: 153 PQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPG-------------------------T 187
Query: 287 TGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDGCGGEGGGAGGG 342
+G+ Y Q GEPG GP G G GP G G+ G +G
Sbjct: 188 SGHPGSPGSPGY-----------QGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRP 236
Query: 343 DGPEEPALPSLEGV 356
P E LP G+
Sbjct: 237 GRPGERGLPGPPGI 250
Score = 34.7 bits (78), Expect = 0.16
Identities = 33/108 (30%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVG--TGGG 218
PG G G+PG G +S P +P+ G +VG G
Sbjct: 114 PGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYP 173
Query: 219 GTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPG--APS-PPEPGGEI 262
G G G G + G+ G G GPP PG PS PP P G I
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAI 221
Score = 34.7 bits (78), Expect = 0.16
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG------GGAGGSSV- 213
PG D T+ G G PG GE S+ +P P P P G GG G +++
Sbjct: 1148 PGKDGTSGHPGPIGPPGPRGNRGER-GSEGSPGHPGQPGPPGPPGAPGPCCGGVGAAAIA 1206
Query: 214 GTGGGGTGGVGGGAGSE 230
G GG GG G E
Sbjct: 1207 GIGGEKAGGFAPYYGDE 1223
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 60.5 bits (145), Expect = 3e-09
Identities = 69/218 (31%), Positives = 83/218 (38%), Gaps = 33/218 (15%)
Query: 159 PIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAP----------------DSAPGPAPKR 202
P P S ++ S G G G G G D + S P S PG K
Sbjct: 128 PSPSSKLSSVASNGGGAGGAGGGAAGDKDTKSGPLKLSDIGVEDKSSFKPYSKPGSDKKE 187
Query: 203 PRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDR--GGTLGGGTLGPPSPPGAPSPPEPGG 260
P GGG GGGG GG GGG SE SG R T T SP + S PGG
Sbjct: 188 PGGGGG-------GGGGGGGGGGGVSSEKSGFRVPSATCQPFTPRTGSPSSSASACSPGG 240
Query: 261 EIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLAL-RIALERRQQQEAGE--PG 317
+ +K + K TG A+ + LA RI+ + + G
Sbjct: 241 MLSSAGGAPEGKDDKKDTDVGGGGKGTGGASAEGGPTGLAHGRISCGGGINVDVNQHPDG 300
Query: 318 GPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
GPGG A G D CGG G+ G GP P S+ G
Sbjct: 301 GPGGKAL---GSD-CGG-SSGSSSGSGPSAPTSSSVLG 333
Score = 38.9 bits (89), Expect = 0.008
Identities = 49/174 (28%), Positives = 65/174 (37%), Gaps = 19/174 (10%)
Query: 211 SSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP-----EPGGEIELV 265
SS +GGGG GG GGGA + G G GP S P + P P +
Sbjct: 12 SSKHSGGGGGGGGGGGADPAWTSALSGNSSGP--GPGSSPAGSTKPFVHAVPPSDPLRQA 69
Query: 266 FRPHPLLVEK------GEYCQTRYVKTTGNATVDHL---SKYLALRIALERRQQQEAGEP 316
R P+ V K G Y++ + V + +K L + + Q +P
Sbjct: 70 NR-LPIKVLKMLTARTGHILHPEYLQPLPSTPVSPIELDAKKSPLALLAQTCSQIGKPDP 128
Query: 317 GGPGGGASDTGGPDGCGGEGGGAGGG-DGPEEPALPSLEGVSEK-QYTIYIAPG 368
+S G GG GGGA G D P S GV +K + Y PG
Sbjct: 129 SPSSKLSSVASNGGGAGGAGGGAAGDKDTKSGPLKLSDIGVEDKSSFKPYSKPG 182
Score = 31.2 bits (69), Expect = 1.8
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 307 RRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEGV 356
R + G GG GGG +D G G G G P P + V
Sbjct: 11 RSSKHSGGGGGGGGGGGADPAWTSALSGNSSGPGPGSSPAGSTKPFVHAV 60
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 58.2 bits (139), Expect = 1e-08
Identities = 64/234 (27%), Positives = 81/234 (34%), Gaps = 40/234 (17%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG---------GGAGGS 211
PG G +GEPG DG P P P+ P G G G
Sbjct: 1467 PGGPGLRGPKGQQGEPGPKGPDGPR-GEIGLPGPQGPPGPQGPSGLSIQGMPGMPGEKGE 1525
Query: 212 SVGTGGGGTGGVGGGAGSE----DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR 267
TG G G+ GG GS G RG G+ GPP PPG P G +
Sbjct: 1526 KGDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPGPPGPIGIPGTPGVPGITGS 1585
Query: 268 PHPLLV--------------EKGEYCQTRYVKTTGNATVD-----HLSKYLALRIALE-- 306
P E+G+ V++ + H+++Y A+ +
Sbjct: 1586 MGPQGALGPPGVPGAKGERGERGDLQSQAMVRSVARQVCEQLIQSHMARYTAILNQIPSH 1645
Query: 307 ----RRQQQEAGEPGGPGG-GASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
R Q GEPG PG GA GP G G G AG P E L ++G
Sbjct: 1646 SSSIRTVQGPPGEPGRPGSPGAPGEQGPPGTPGFPGNAGVPGTPGERGLTGIKG 1699
Score = 47.4 bits (111), Expect = 2e-05
Identities = 39/134 (29%), Positives = 50/134 (37%), Gaps = 12/134 (8%)
Query: 135 QALSSSIEEGLRMQAMHRAQRVRRPIPG-SDQTTTMSGGEGEPGEGEGDGEDVSSDSAPD 193
++++ + E L M R + IP S T+ G GEPG G + P
Sbjct: 1617 RSVARQVCEQLIQSHMARYTAILNQIPSHSSSIRTVQGPPGEPGRPGSPG--APGEQGPP 1674
Query: 194 SAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRG-----GTLGGGTLGPPS 248
PG P G G+ G G G G G G RG G G G P
Sbjct: 1675 GTPG----FPGNAGVPGTPGERGLTGIKGEKGNPGVGTQGPRGPPGPAGPSGESRPGSPG 1730
Query: 249 PPGAPSPPEPGGEI 262
PPG+P P P G +
Sbjct: 1731 PPGSPGPRGPPGHL 1744
Score = 32.3 bits (72), Expect = 0.79
Identities = 38/146 (26%), Positives = 46/146 (31%), Gaps = 55/146 (37%)
Query: 216 GGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 275
GG G G G G + G +G G +G P P G P P P G
Sbjct: 1468 GGPGLRGPKGQQG--EPGPKGPDGPRGEIGLPGPQGPPGPQGPSG--------------- 1510
Query: 276 GEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTG--GPDG 331
L+++ G PG PG G DTG GP G
Sbjct: 1511 -----------------------LSIQ-----------GMPGMPGEKGEKGDTGLPGPQG 1536
Query: 332 CGGEGGGAGGGDGPEEPALPSLEGVS 357
G G G P + LP +G S
Sbjct: 1537 IPGGVGSPGRDGSPGQRGLPGKDGSS 1562
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 57.8 bits (138), Expect = 2e-08
Identities = 67/208 (32%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 171 GGEGEPGE----GEGDGEDVSSDSAPDSAPG---PAPKR--PRGGGAGGSSVGTGGGGTG 221
G G PGE G E D P APG PA R P G G++ G G G
Sbjct: 860 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 919
Query: 222 GVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G G G S G+RG GG +GPP PG PP G EKG +
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAG-------------EKGVPGE 966
Query: 281 TRYVKTTGNATVDHLSKYLAL-------RIALERRQQQEAGEPG--GPGGGASDTG--GP 329
+ TG D + + L +A E + E G+PG G G + G GP
Sbjct: 967 KGPIGPTGR---DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP 1023
Query: 330 DGCGGEGG--GAGGGDGPEEPALPSLEG 355
G G G GA G DG EP +G
Sbjct: 1024 PGPIGPVGQPGAAGADG--EPGARGPQG 1049
Score = 55.1 bits (131), Expect = 1e-07
Identities = 68/233 (29%), Positives = 79/233 (33%), Gaps = 54/233 (23%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPA--PKRPRGGGAGGSSVGTGG 217
PG D + G GE G G G + + P PGPA P G+GG G
Sbjct: 889 PGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 948
Query: 218 GGTGGVGGGAGSE----DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G AG + + G G T G GP PG PP GE
Sbjct: 949 PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDG---------- 998
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--------GGASD 325
+KGE T GN + E G PG PG G A
Sbjct: 999 DKGEVGDPGQKGTKGN--------------------KGEHGPPGPPGPIGPVGQPGAAGA 1038
Query: 326 TGGPDGCGGEG-------GGAGGGDGPEEP-ALPSLEGVS-EKQYTIYIAPGG 369
G P G +G G G +GP P L L G S EK T + P G
Sbjct: 1039 DGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1091
Score = 53.5 bits (127), Expect = 3e-07
Identities = 60/227 (26%), Positives = 82/227 (36%), Gaps = 45/227 (19%)
Query: 160 IPGSDQTTTMSGGEGEPGE----GEGDGEDVSSDSAPDSAPGPAPK--RPRGGGAGGSSV 213
+PG ++G +G+ GE G+ + + P PGP +P GA G
Sbjct: 984 LPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPG 1043
Query: 214 GTGGGGTGGVGGGAGSED----------------SGDRGGTLGGGTLGPPSPP------- 250
G G G G G+ SG++G T G +GPP PP
Sbjct: 1044 ARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAG 1103
Query: 251 --GAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERR 308
GA P P G + + P EKGE ++ G V ER
Sbjct: 1104 PNGADGPQGPPGGVGNLGPPG----EKGEPGESGSPGIQGEPGVKGPRG--------ERG 1151
Query: 309 QQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
++ E+G+PG P G GP G G G G P +P P G
Sbjct: 1152 EKGESGQPGEP--GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1196
Score = 51.6 bits (122), Expect = 1e-06
Identities = 63/200 (31%), Positives = 71/200 (35%), Gaps = 38/200 (19%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
PG G G PG GE +S S P GP R + G G TG G
Sbjct: 718 PGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGA----TGKSG 773
Query: 220 TGGVGGGAGSEDS-GDRG--GTLG-GGTLGPPSPPGAPS----PPEPGGEIELVFRPHPL 271
G GG G G+RG G G G GP PPG P P PG E+ F+
Sbjct: 774 AKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQG--- 830
Query: 272 LVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTG 327
+ G V G A E E G PG PG G T
Sbjct: 831 --KTGPPGPPGVVGPQGAAG--------------ETGPMGERGHPGPPGPPGEQGLPGTA 874
Query: 328 GPDGCGGEGG--GAGGGDGP 345
G +G G+ G GA G DGP
Sbjct: 875 GKEGTKGDPGPPGAPGKDGP 894
Score = 50.8 bits (120), Expect = 2e-06
Identities = 64/214 (29%), Positives = 73/214 (34%), Gaps = 30/214 (14%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGE---PGE-GEGDGEDVSSDSAPDSAPGPA-----PKR 202
R QR R G SGG+G PGE G + + P PGP P
Sbjct: 760 RGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH 819
Query: 203 PRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEI 262
P G G TG G GV G G+ +G+ G G GPP PPG P G+
Sbjct: 820 PGQRGEVGFQGKTGPPGPPGVVGPQGA--AGETGPMGERGHPGPPGPPGEQGLPGTAGKE 877
Query: 263 ELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG- 321
P P G L + ER AG PG G
Sbjct: 878 GTKGDPGP-------------PGAPGKDGPAGLRGFPG-----ERGLPGTAGGPGLKGNE 919
Query: 322 GASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G S GP G GE G AG G P P +G
Sbjct: 920 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 953
Score = 48.9 bits (115), Expect = 8e-06
Identities = 64/213 (30%), Positives = 75/213 (35%), Gaps = 29/213 (13%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGG 217
+PGSD G EG PG G S P PGP + G G G G
Sbjct: 597 MPGSDGPPGHPGKEGPPGTKGNQGP--SGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 654
Query: 218 GGTGGVGGGAGSEDSGDRG--GTLGG-GTLGPPSPPGAPSPP-EPGGEIELVFRPHPLLV 273
G G G G + GDRG G G G GP P G P +PG P L+
Sbjct: 655 DGFPGFKGDIGVK--GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPG--------PPGLMG 704
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG-----G 328
EKG+ G + A + + GP G TG G
Sbjct: 705 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 764
Query: 329 PDGCGGEGG--GAGGGDGPEEP----ALPSLEG 355
P G G+ G G GGDGP P LP +G
Sbjct: 765 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 797
Score = 48.5 bits (114), Expect = 1e-05
Identities = 58/198 (29%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 171 GGEGEPGEGEGDGED-VSSDSAPDSAPG-PAPKRPRGGGAGGSSVGTGG--GGTGGVGGG 226
G G PGEG G+D D D PG P P G +G G G G G
Sbjct: 1187 GDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1246
Query: 227 AGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV-EKGEYCQTRYVK 285
G GD G G GP P G P P G R P V ++G T
Sbjct: 1247 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDG-----LRGLPGSVGQQGRPGATGQAG 1301
Query: 286 TTGNATVDHLSKYLALRIALERRQQQEAGEPG-----GPGGGASDTG-----GPDGCGGE 335
G L + + + E G PG GP G + G GP G G+
Sbjct: 1302 PPGPVGPPGLP-----GLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQ 1356
Query: 336 GG--GAGGGDGPEEPALP 351
G G G GP P P
Sbjct: 1357 KGEMGIPGASGPIGPGGP 1374
Score = 47.0 bits (110), Expect = 3e-05
Identities = 57/185 (30%), Positives = 67/185 (36%), Gaps = 19/185 (10%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGG-GAGGSSVGTGGGGTGGVGGGAG 228
G G PG+ V D D PG P K RG GA G G G G G G
Sbjct: 458 GARGMPGD-----PGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 512
Query: 229 SEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTG 288
G G LGP PPG P PP G ++ P L +GE T G
Sbjct: 513 PRGLPGESGPRG--LLGPKGPPGIPGPPGVRG-MDGPQGPKGSLGPQGEPGPPGQQGTPG 569
Query: 289 NATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPE 346
+ + ++ G+PG PG SD GP G G+ G G G GP
Sbjct: 570 TQGLPGPQGAIG-----PHGEKGPQGKPGLPGMPGSD--GPPGHPGKEGPPGTKGNQGPS 622
Query: 347 EPALP 351
P P
Sbjct: 623 GPQGP 627
Score = 44.7 bits (104), Expect = 2e-04
Identities = 61/208 (29%), Positives = 70/208 (33%), Gaps = 50/208 (24%)
Query: 171 GGEGEPGEGEGDGE-DVSSDSAPDSAPGP-APKRPRGGGAGGSSVGT----GGGGTGGVG 224
G +GEPG GE +S PGP PK P G + G G G G G
Sbjct: 1136 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1195
Query: 225 GGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRY 283
G G + + GDRG G G P P G PP P G+ P + G+
Sbjct: 1196 GPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGA---- 1251
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDGCGGEGG-- 337
+ G PG GP G A G GPDG G G
Sbjct: 1252 -----------------------KGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSV 1288
Query: 338 ------GAGGGDGPE----EPALPSLEG 355
GA G GP P LP L G
Sbjct: 1289 GQQGRPGATGQAGPPGPVGPPGLPGLRG 1316
Score = 44.3 bits (103), Expect = 2e-04
Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 160 IPGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGP--APKRPRGGGAGGSSVGTG 216
+PG G +G PG G + PGP +P + G G+S G
Sbjct: 1311 LPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1370
Query: 217 GGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKG 276
GG G+ G AG + G +G T GG G G P P P GE V +P P+ + K
Sbjct: 1371 PGGPPGLPGPAGPK--GAKGATGPGGPKGEKGVQGPPGHPGPPGE---VIQPLPIQMPK- 1424
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG 321
+TR +VD R+ E G PG PGG
Sbjct: 1425 ---KTR-------RSVD------GSRLMQEDEAIPTGGAPGSPGG 1453
Score = 43.1 bits (100), Expect = 4e-04
Identities = 63/229 (27%), Positives = 79/229 (34%), Gaps = 44/229 (19%)
Query: 144 GLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGP- 198
GL + HR + +PG G +GE G GE + P PGP
Sbjct: 479 GLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPP 538
Query: 199 ------APKRPRGG-GAGGSSVGTGGGGTGGVGGGAGSEDS----GDRG--GTLG----G 241
P+ P+G G G G GT G G G + + G++G G G
Sbjct: 539 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 598
Query: 242 GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLAL 301
G+ GPP PG PP G G Y G VD +
Sbjct: 599 GSDGPPGHPGKEGPPGTKGN----------QGPSGPQGPLGYPGPRGVKGVDGIRGL--- 645
Query: 302 RIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPEEP 348
+ + E GE G P G G G GE G G+ G DGPE P
Sbjct: 646 -----KGHKGEKGEDGFP--GFKGDIGVKGDRGEVGVPGSRGEDGPEGP 687
Score = 42.7 bits (99), Expect = 6e-04
Identities = 62/221 (28%), Positives = 74/221 (33%), Gaps = 58/221 (26%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGG-- 217
G D G +GEPG+ G + + PGP KR G G+ G G G
Sbjct: 1199 GQDGAKGDRGEDGEPGQPGSPGP-----TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1253
Query: 218 --------GGTGGVG--GGAGSE----------DSGDRGGTLGGGTLGPPSPPGAPSPPE 257
G TG VG G AG G +G G GPP P G P P
Sbjct: 1254 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG 1313
Query: 258 PGGEIELV-FRPHPLLV-------EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQ 309
G+ + HP L+ E+GE G+ Q
Sbjct: 1314 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSP-----------------GQ 1356
Query: 310 QQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPEEP 348
+ E G PG G GGP G G G GA G GP P
Sbjct: 1357 KGEMGIPG--ASGPIGPGGPPGLPGPAGPKGAKGATGPGGP 1395
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG D + G G+ G G+ + P GP P P G G+ G G
Sbjct: 1276 PGPDGLRGLPGSVGQQGRPGATGQ-----AGPPGPVGP-PGLPGLRGDAGAKGEKGHPGL 1329
Query: 221 GGVGGGAGSE-DSGDRG-----------GTLG----GGTLGPPSPPGAPSPPEPGG 260
G+ G G + + GDRG G +G G +GP PPG P P P G
Sbjct: 1330 IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1385
Score = 38.1 bits (87), Expect = 0.014
Identities = 64/237 (27%), Positives = 81/237 (34%), Gaps = 34/237 (14%)
Query: 148 QAMHRAQRVRRPIPGS---DQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPR 204
Q HRAQR + P Q + PGE E E ++A GP +
Sbjct: 239 QQPHRAQRSPQQQPSRLHRPQNQEPQSQDPTPGEEEEILESSLLPPLEEAAHGPRGLKGE 298
Query: 205 GG------------GAGGSSVGTGGGGTGGVGGGAGSE-DSGDRGGTLGGGTLGPPSPPG 251
G G G G G G+ G G D G+RG G G P G
Sbjct: 299 KGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPP---GRAGLPGSDG 355
Query: 252 APSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
AP P PG + L FR +KG + + L+ +
Sbjct: 356 APGP--PGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPG 413
Query: 312 EAGEPGGPG--GGASDTG-----GPDGCGGEGGGAG-----GGDGPE-EPALPSLEG 355
G+PG PG G + D G GP G G G AG G DG P P ++G
Sbjct: 414 PLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKG 470
Score = 35.4 bits (80), Expect = 0.093
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 38/234 (16%)
Query: 142 EEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPK 201
+E + +A+ R PG T G G+PG GE S D P GP
Sbjct: 384 QEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGE--SGDLGPQGPRGPQGL 441
Query: 202 RPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRG--GTLG-GGTLGPPSPPGAPSPPEP 258
G AG G G G+ G G + GDRG G G G G GA P P
Sbjct: 442 TGPPGKAGRRG-RAGADGARGMPGDPGVK--GDRGFDGLPGLPGEKGHRGDTGAQGLPGP 498
Query: 259 GGE--------------IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIA 304
GE + P LL KG G V + + +
Sbjct: 499 PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP------PGIPGPPGVRGMDGPQGPKGS 552
Query: 305 LERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAG--GGDGPE-EPALPSLEG 355
L + GEPG P G T G G G G G G GP+ +P LP + G
Sbjct: 553 LGPQ-----GEPGPP--GQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPG 599
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 57.8 bits (138), Expect = 2e-08
Identities = 67/208 (32%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 171 GGEGEPGE----GEGDGEDVSSDSAPDSAPG---PAPKR--PRGGGAGGSSVGTGGGGTG 221
G G PGE G E D P APG PA R P G G++ G G G
Sbjct: 839 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 898
Query: 222 GVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G G G S G+RG GG +GPP PG PP G EKG +
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAG-------------EKGVPGE 945
Query: 281 TRYVKTTGNATVDHLSKYLAL-------RIALERRQQQEAGEPG--GPGGGASDTG--GP 329
+ TG D + + L +A E + E G+PG G G + G GP
Sbjct: 946 KGPIGPTGR---DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP 1002
Query: 330 DGCGGEGG--GAGGGDGPEEPALPSLEG 355
G G G GA G DG EP +G
Sbjct: 1003 PGPIGPVGQPGAAGADG--EPGARGPQG 1028
Score = 55.1 bits (131), Expect = 1e-07
Identities = 68/233 (29%), Positives = 79/233 (33%), Gaps = 54/233 (23%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPA--PKRPRGGGAGGSSVGTGG 217
PG D + G GE G G G + + P PGPA P G+GG G
Sbjct: 868 PGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 927
Query: 218 GGTGGVGGGAGSE----DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G AG + + G G T G GP PG PP GE
Sbjct: 928 PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDG---------- 977
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--------GGASD 325
+KGE T GN + E G PG PG G A
Sbjct: 978 DKGEVGDPGQKGTKGN--------------------KGEHGPPGPPGPIGPVGQPGAAGA 1017
Query: 326 TGGPDGCGGEG-------GGAGGGDGPEEP-ALPSLEGVS-EKQYTIYIAPGG 369
G P G +G G G +GP P L L G S EK T + P G
Sbjct: 1018 DGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1070
Score = 53.5 bits (127), Expect = 3e-07
Identities = 60/227 (26%), Positives = 82/227 (36%), Gaps = 45/227 (19%)
Query: 160 IPGSDQTTTMSGGEGEPGE----GEGDGEDVSSDSAPDSAPGPAPK--RPRGGGAGGSSV 213
+PG ++G +G+ GE G+ + + P PGP +P GA G
Sbjct: 963 LPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPG 1022
Query: 214 GTGGGGTGGVGGGAGSED----------------SGDRGGTLGGGTLGPPSPP------- 250
G G G G G+ SG++G T G +GPP PP
Sbjct: 1023 ARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAG 1082
Query: 251 --GAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERR 308
GA P P G + + P EKGE ++ G V ER
Sbjct: 1083 PNGADGPQGPPGGVGNLGPPG----EKGEPGESGSPGIQGEPGVKGPRG--------ERG 1130
Query: 309 QQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
++ E+G+PG P G GP G G G G P +P P G
Sbjct: 1131 EKGESGQPGEP--GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1175
Score = 51.6 bits (122), Expect = 1e-06
Identities = 63/200 (31%), Positives = 71/200 (35%), Gaps = 38/200 (19%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
PG G G PG GE +S S P GP R + G G TG G
Sbjct: 697 PGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGA----TGKSG 752
Query: 220 TGGVGGGAGSEDS-GDRG--GTLG-GGTLGPPSPPGAPS----PPEPGGEIELVFRPHPL 271
G GG G G+RG G G G GP PPG P P PG E+ F+
Sbjct: 753 AKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQG--- 809
Query: 272 LVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTG 327
+ G V G A E E G PG PG G T
Sbjct: 810 --KTGPPGPPGVVGPQGAAG--------------ETGPMGERGHPGPPGPPGEQGLPGTA 853
Query: 328 GPDGCGGEGG--GAGGGDGP 345
G +G G+ G GA G DGP
Sbjct: 854 GKEGTKGDPGPPGAPGKDGP 873
Score = 50.8 bits (120), Expect = 2e-06
Identities = 64/214 (29%), Positives = 73/214 (34%), Gaps = 30/214 (14%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGE---PGE-GEGDGEDVSSDSAPDSAPGPA-----PKR 202
R QR R G SGG+G PGE G + + P PGP P
Sbjct: 739 RGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH 798
Query: 203 PRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEI 262
P G G TG G GV G G+ +G+ G G GPP PPG P G+
Sbjct: 799 PGQRGEVGFQGKTGPPGPPGVVGPQGA--AGETGPMGERGHPGPPGPPGEQGLPGTAGKE 856
Query: 263 ELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG- 321
P P G L + ER AG PG G
Sbjct: 857 GTKGDPGP-------------PGAPGKDGPAGLRGFPG-----ERGLPGTAGGPGLKGNE 898
Query: 322 GASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G S GP G GE G AG G P P +G
Sbjct: 899 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 932
Score = 48.9 bits (115), Expect = 8e-06
Identities = 64/213 (30%), Positives = 75/213 (35%), Gaps = 29/213 (13%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGG 217
+PGSD G EG PG G S P PGP + G G G G
Sbjct: 576 MPGSDGPPGHPGKEGPPGTKGNQGP--SGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 633
Query: 218 GGTGGVGGGAGSEDSGDRG--GTLGG-GTLGPPSPPGAPSPP-EPGGEIELVFRPHPLLV 273
G G G G + GDRG G G G GP P G P +PG P L+
Sbjct: 634 DGFPGFKGDIGVK--GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPG--------PPGLMG 683
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG-----G 328
EKG+ G + A + + GP G TG G
Sbjct: 684 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 743
Query: 329 PDGCGGEGG--GAGGGDGPEEP----ALPSLEG 355
P G G+ G G GGDGP P LP +G
Sbjct: 744 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 776
Score = 48.5 bits (114), Expect = 1e-05
Identities = 58/198 (29%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 171 GGEGEPGEGEGDGED-VSSDSAPDSAPG-PAPKRPRGGGAGGSSVGTGG--GGTGGVGGG 226
G G PGEG G+D D D PG P P G +G G G G G
Sbjct: 1166 GDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1225
Query: 227 AGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV-EKGEYCQTRYVK 285
G GD G G GP P G P P G R P V ++G T
Sbjct: 1226 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDG-----LRGLPGSVGQQGRPGATGQAG 1280
Query: 286 TTGNATVDHLSKYLALRIALERRQQQEAGEPG-----GPGGGASDTG-----GPDGCGGE 335
G L + + + E G PG GP G + G GP G G+
Sbjct: 1281 PPGPVGPPGLP-----GLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQ 1335
Query: 336 GG--GAGGGDGPEEPALP 351
G G G GP P P
Sbjct: 1336 KGEMGIPGASGPIGPGGP 1353
Score = 47.0 bits (110), Expect = 3e-05
Identities = 57/185 (30%), Positives = 67/185 (36%), Gaps = 19/185 (10%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGG-GAGGSSVGTGGGGTGGVGGGAG 228
G G PG+ V D D PG P K RG GA G G G G G G
Sbjct: 437 GARGMPGD-----PGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 491
Query: 229 SEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTG 288
G G LGP PPG P PP G ++ P L +GE T G
Sbjct: 492 PRGLPGESGPRG--LLGPKGPPGIPGPPGVRG-MDGPQGPKGSLGPQGEPGPPGQQGTPG 548
Query: 289 NATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPE 346
+ + ++ G+PG PG SD GP G G+ G G G GP
Sbjct: 549 TQGLPGPQGAIG-----PHGEKGPQGKPGLPGMPGSD--GPPGHPGKEGPPGTKGNQGPS 601
Query: 347 EPALP 351
P P
Sbjct: 602 GPQGP 606
Score = 44.7 bits (104), Expect = 2e-04
Identities = 61/208 (29%), Positives = 70/208 (33%), Gaps = 50/208 (24%)
Query: 171 GGEGEPGEGEGDGE-DVSSDSAPDSAPGP-APKRPRGGGAGGSSVGT----GGGGTGGVG 224
G +GEPG GE +S PGP PK P G + G G G G G
Sbjct: 1115 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1174
Query: 225 GGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRY 283
G G + + GDRG G G P P G PP P G+ P + G+
Sbjct: 1175 GPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGA---- 1230
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDGCGGEGG-- 337
+ G PG GP G A G GPDG G G
Sbjct: 1231 -----------------------KGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSV 1267
Query: 338 ------GAGGGDGPE----EPALPSLEG 355
GA G GP P LP L G
Sbjct: 1268 GQQGRPGATGQAGPPGPVGPPGLPGLRG 1295
Score = 44.3 bits (103), Expect = 2e-04
Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 160 IPGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGP--APKRPRGGGAGGSSVGTG 216
+PG G +G PG G + PGP +P + G G+S G
Sbjct: 1290 LPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1349
Query: 217 GGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKG 276
GG G+ G AG + G +G T GG G G P P P GE V +P P+ + K
Sbjct: 1350 PGGPPGLPGPAGPK--GAKGATGPGGPKGEKGVQGPPGHPGPPGE---VIQPLPIQMPK- 1403
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG 321
+TR +VD R+ E G PG PGG
Sbjct: 1404 ---KTR-------RSVD------GSRLMQEDEAIPTGGAPGSPGG 1432
Score = 43.1 bits (100), Expect = 4e-04
Identities = 63/229 (27%), Positives = 79/229 (34%), Gaps = 44/229 (19%)
Query: 144 GLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGP- 198
GL + HR + +PG G +GE G GE + P PGP
Sbjct: 458 GLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPP 517
Query: 199 ------APKRPRGG-GAGGSSVGTGGGGTGGVGGGAGSEDS----GDRG--GTLG----G 241
P+ P+G G G G GT G G G + + G++G G G
Sbjct: 518 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 577
Query: 242 GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLAL 301
G+ GPP PG PP G G Y G VD +
Sbjct: 578 GSDGPPGHPGKEGPPGTKGN----------QGPSGPQGPLGYPGPRGVKGVDGIRGL--- 624
Query: 302 RIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPEEP 348
+ + E GE G P G G G GE G G+ G DGPE P
Sbjct: 625 -----KGHKGEKGEDGFP--GFKGDIGVKGDRGEVGVPGSRGEDGPEGP 666
Score = 42.7 bits (99), Expect = 6e-04
Identities = 62/221 (28%), Positives = 74/221 (33%), Gaps = 58/221 (26%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGG-- 217
G D G +GEPG+ G + + PGP KR G G+ G G G
Sbjct: 1178 GQDGAKGDRGEDGEPGQPGSPGP-----TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1232
Query: 218 --------GGTGGVG--GGAGSE----------DSGDRGGTLGGGTLGPPSPPGAPSPPE 257
G TG VG G AG G +G G GPP P G P P
Sbjct: 1233 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG 1292
Query: 258 PGGEIELV-FRPHPLLV-------EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQ 309
G+ + HP L+ E+GE G+ Q
Sbjct: 1293 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSP-----------------GQ 1335
Query: 310 QQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPEEP 348
+ E G PG G GGP G G G GA G GP P
Sbjct: 1336 KGEMGIPG--ASGPIGPGGPPGLPGPAGPKGAKGATGPGGP 1374
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG D + G G+ G G+ + P GP P P G G+ G G
Sbjct: 1255 PGPDGLRGLPGSVGQQGRPGATGQ-----AGPPGPVGP-PGLPGLRGDAGAKGEKGHPGL 1308
Query: 221 GGVGGGAGSE-DSGDRG-----------GTLG----GGTLGPPSPPGAPSPPEPGG 260
G+ G G + + GDRG G +G G +GP PPG P P P G
Sbjct: 1309 IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1364
Score = 40.0 bits (92), Expect = 0.004
Identities = 66/231 (28%), Positives = 84/231 (36%), Gaps = 43/231 (18%)
Query: 148 QAMHRAQR--------VRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA 199
Q HRAQR + RP Q+ G G GE +G+ + + PGP
Sbjct: 239 QQPHRAQRSPQQQPSRLHRPQNQEPQSQAAHGPRGLKGE-KGEPAVLEPGMLVEGPPGPE 297
Query: 200 PKRPRGGGAGGSSVGTGG--GGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPE 257
G AG +G G G G VG D G+RG G G P GAP P
Sbjct: 298 ------GPAG--LIGPPGIQGNPGPVG------DPGERGPP---GRAGLPGSDGAPGP-- 338
Query: 258 PGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG 317
PG + L FR +KG + + L+ + G+PG
Sbjct: 339 PGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPG 398
Query: 318 GPG--GGASDTG-----GPDGCGGEGGGAG-----GGDGPE-EPALPSLEG 355
PG G + D G GP G G G AG G DG P P ++G
Sbjct: 399 SPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKG 449
Score = 35.4 bits (80), Expect = 0.093
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 38/234 (16%)
Query: 142 EEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPK 201
+E + +A+ R PG T G G+PG GE S D P GP
Sbjct: 363 QEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGE--SGDLGPQGPRGPQGL 420
Query: 202 RPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRG--GTLG-GGTLGPPSPPGAPSPPEP 258
G AG G G G+ G G + GDRG G G G G GA P P
Sbjct: 421 TGPPGKAGRRG-RAGADGARGMPGDPGVK--GDRGFDGLPGLPGEKGHRGDTGAQGLPGP 477
Query: 259 GGE--------------IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIA 304
GE + P LL KG G V + + +
Sbjct: 478 PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP------PGIPGPPGVRGMDGPQGPKGS 531
Query: 305 LERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAG--GGDGPE-EPALPSLEG 355
L + GEPG P G T G G G G G G GP+ +P LP + G
Sbjct: 532 LGPQ-----GEPGPP--GQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPG 578
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 57.8 bits (138), Expect = 2e-08
Identities = 67/208 (32%), Positives = 80/208 (38%), Gaps = 41/208 (19%)
Query: 171 GGEGEPGE----GEGDGEDVSSDSAPDSAPG---PAPKR--PRGGGAGGSSVGTGGGGTG 221
G G PGE G E D P APG PA R P G G++ G G G
Sbjct: 946 GPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNE 1005
Query: 222 GVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G G G S G+RG GG +GPP PG PP G EKG +
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAG-------------EKGVPGE 1052
Query: 281 TRYVKTTGNATVDHLSKYLAL-------RIALERRQQQEAGEPG--GPGGGASDTG--GP 329
+ TG D + + L +A E + E G+PG G G + G GP
Sbjct: 1053 KGPIGPTGR---DGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGP 1109
Query: 330 DGCGGEGG--GAGGGDGPEEPALPSLEG 355
G G G GA G DG EP +G
Sbjct: 1110 PGPIGPVGQPGAAGADG--EPGARGPQG 1135
Score = 55.1 bits (131), Expect = 1e-07
Identities = 68/233 (29%), Positives = 79/233 (33%), Gaps = 54/233 (23%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPA--PKRPRGGGAGGSSVGTGG 217
PG D + G GE G G G + + P PGPA P G+GG G
Sbjct: 975 PGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGR 1034
Query: 218 GGTGGVGGGAGSE----DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G AG + + G G T G GP PG PP GE
Sbjct: 1035 PGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDG---------- 1084
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--------GGASD 325
+KGE T GN + E G PG PG G A
Sbjct: 1085 DKGEVGDPGQKGTKGN--------------------KGEHGPPGPPGPIGPVGQPGAAGA 1124
Query: 326 TGGPDGCGGEG-------GGAGGGDGPEEP-ALPSLEGVS-EKQYTIYIAPGG 369
G P G +G G G +GP P L L G S EK T + P G
Sbjct: 1125 DGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMG 1177
Score = 53.5 bits (127), Expect = 3e-07
Identities = 60/227 (26%), Positives = 82/227 (36%), Gaps = 45/227 (19%)
Query: 160 IPGSDQTTTMSGGEGEPGE----GEGDGEDVSSDSAPDSAPGPAPK--RPRGGGAGGSSV 213
+PG ++G +G+ GE G+ + + P PGP +P GA G
Sbjct: 1070 LPGPAGPPGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPG 1129
Query: 214 GTGGGGTGGVGGGAGSED----------------SGDRGGTLGGGTLGPPSPP------- 250
G G G G G+ SG++G T G +GPP PP
Sbjct: 1130 ARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAG 1189
Query: 251 --GAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERR 308
GA P P G + + P EKGE ++ G V ER
Sbjct: 1190 PNGADGPQGPPGGVGNLGPPG----EKGEPGESGSPGIQGEPGVKGPRG--------ERG 1237
Query: 309 QQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
++ E+G+PG P G GP G G G G P +P P G
Sbjct: 1238 EKGESGQPGEP--GPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEGG 1282
Score = 51.6 bits (122), Expect = 1e-06
Identities = 63/200 (31%), Positives = 71/200 (35%), Gaps = 38/200 (19%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
PG G G PG GE +S S P GP R + G G TG G
Sbjct: 804 PGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGA----TGKSG 859
Query: 220 TGGVGGGAGSEDS-GDRG--GTLG-GGTLGPPSPPGAPS----PPEPGGEIELVFRPHPL 271
G GG G G+RG G G G GP PPG P P PG E+ F+
Sbjct: 860 AKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQG--- 916
Query: 272 LVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTG 327
+ G V G A E E G PG PG G T
Sbjct: 917 --KTGPPGPPGVVGPQGAAG--------------ETGPMGERGHPGPPGPPGEQGLPGTA 960
Query: 328 GPDGCGGEGG--GAGGGDGP 345
G +G G+ G GA G DGP
Sbjct: 961 GKEGTKGDPGPPGAPGKDGP 980
Score = 50.8 bits (120), Expect = 2e-06
Identities = 64/214 (29%), Positives = 73/214 (34%), Gaps = 30/214 (14%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGE---PGE-GEGDGEDVSSDSAPDSAPGPA-----PKR 202
R QR R G SGG+G PGE G + + P PGP P
Sbjct: 846 RGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGH 905
Query: 203 PRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEI 262
P G G TG G GV G G+ +G+ G G GPP PPG P G+
Sbjct: 906 PGQRGEVGFQGKTGPPGPPGVVGPQGA--AGETGPMGERGHPGPPGPPGEQGLPGTAGKE 963
Query: 263 ELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG- 321
P P G L + ER AG PG G
Sbjct: 964 GTKGDPGP-------------PGAPGKDGPAGLRGFPG-----ERGLPGTAGGPGLKGNE 1005
Query: 322 GASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G S GP G GE G AG G P P +G
Sbjct: 1006 GPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQG 1039
Score = 48.9 bits (115), Expect = 8e-06
Identities = 64/213 (30%), Positives = 75/213 (35%), Gaps = 29/213 (13%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGG 217
+PGSD G EG PG G S P PGP + G G G G
Sbjct: 683 MPGSDGPPGHPGKEGPPGTKGNQGP--SGPQGPLGYPGPRGVKGVDGIRGLKGHKGEKGE 740
Query: 218 GGTGGVGGGAGSEDSGDRG--GTLGG-GTLGPPSPPGAPSPP-EPGGEIELVFRPHPLLV 273
G G G G + GDRG G G G GP P G P +PG P L+
Sbjct: 741 DGFPGFKGDIGVK--GDRGEVGVPGSRGEDGPEGPKGRTGPTGDPG--------PPGLMG 790
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG-----G 328
EKG+ G + A + + GP G TG G
Sbjct: 791 EKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGERGPTGPRGQRG 850
Query: 329 PDGCGGEGG--GAGGGDGPEEP----ALPSLEG 355
P G G+ G G GGDGP P LP +G
Sbjct: 851 PRGATGKSGAKGTSGGDGPHGPPGERGLPGPQG 883
Score = 48.5 bits (114), Expect = 1e-05
Identities = 58/198 (29%), Positives = 67/198 (33%), Gaps = 27/198 (13%)
Query: 171 GGEGEPGEGEGDGED-VSSDSAPDSAPG-PAPKRPRGGGAGGSSVGTGG--GGTGGVGGG 226
G G PGEG G+D D D PG P P G +G G G G G
Sbjct: 1273 GDPGPPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ 1332
Query: 227 AGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV-EKGEYCQTRYVK 285
G GD G G GP P G P P G R P V ++G T
Sbjct: 1333 GGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDG-----LRGLPGSVGQQGRPGATGQAG 1387
Query: 286 TTGNATVDHLSKYLALRIALERRQQQEAGEPG-----GPGGGASDTG-----GPDGCGGE 335
G L + + + E G PG GP G + G GP G G+
Sbjct: 1388 PPGPVGPPGLP-----GLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQ 1442
Query: 336 GG--GAGGGDGPEEPALP 351
G G G GP P P
Sbjct: 1443 KGEMGIPGASGPIGPGGP 1460
Score = 47.0 bits (110), Expect = 3e-05
Identities = 57/185 (30%), Positives = 67/185 (36%), Gaps = 19/185 (10%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGG-GAGGSSVGTGGGGTGGVGGGAG 228
G G PG+ V D D PG P K RG GA G G G G G G
Sbjct: 544 GARGMPGD-----PGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIG 598
Query: 229 SEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTG 288
G G LGP PPG P PP G ++ P L +GE T G
Sbjct: 599 PRGLPGESGPRG--LLGPKGPPGIPGPPGVRG-MDGPQGPKGSLGPQGEPGPPGQQGTPG 655
Query: 289 NATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPE 346
+ + ++ G+PG PG SD GP G G+ G G G GP
Sbjct: 656 TQGLPGPQGAIG-----PHGEKGPQGKPGLPGMPGSD--GPPGHPGKEGPPGTKGNQGPS 708
Query: 347 EPALP 351
P P
Sbjct: 709 GPQGP 713
Score = 44.7 bits (104), Expect = 2e-04
Identities = 61/208 (29%), Positives = 70/208 (33%), Gaps = 50/208 (24%)
Query: 171 GGEGEPGEGEGDGE-DVSSDSAPDSAPGP-APKRPRGGGAGGSSVGT----GGGGTGGVG 224
G +GEPG GE +S PGP PK P G + G G G G G
Sbjct: 1222 GIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDDGPKGNPGPVGFPGDPGPPGEG 1281
Query: 225 GGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRY 283
G G + + GDRG G G P P G PP P G+ P + G+
Sbjct: 1282 GPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKGA---- 1337
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDGCGGEGG-- 337
+ G PG GP G A G GPDG G G
Sbjct: 1338 -----------------------KGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSV 1374
Query: 338 ------GAGGGDGPE----EPALPSLEG 355
GA G GP P LP L G
Sbjct: 1375 GQQGRPGATGQAGPPGPVGPPGLPGLRG 1402
Score = 44.3 bits (103), Expect = 2e-04
Identities = 49/165 (29%), Positives = 64/165 (38%), Gaps = 25/165 (15%)
Query: 160 IPGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGP--APKRPRGGGAGGSSVGTG 216
+PG G +G PG G + PGP +P + G G+S G
Sbjct: 1397 LPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIG 1456
Query: 217 GGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKG 276
GG G+ G AG + G +G T GG G G P P P GE V +P P+ + K
Sbjct: 1457 PGGPPGLPGPAGPK--GAKGATGPGGPKGEKGVQGPPGHPGPPGE---VIQPLPIQMPK- 1510
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG 321
+TR +VD R+ E G PG PGG
Sbjct: 1511 ---KTR-------RSVD------GSRLMQEDEAIPTGGAPGSPGG 1539
Score = 43.1 bits (100), Expect = 4e-04
Identities = 63/229 (27%), Positives = 79/229 (34%), Gaps = 44/229 (19%)
Query: 144 GLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGP- 198
GL + HR + +PG G +GE G GE + P PGP
Sbjct: 565 GLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPP 624
Query: 199 ------APKRPRGG-GAGGSSVGTGGGGTGGVGGGAGSEDS----GDRG--GTLG----G 241
P+ P+G G G G GT G G G + + G++G G G
Sbjct: 625 GVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMP 684
Query: 242 GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLAL 301
G+ GPP PG PP G G Y G VD +
Sbjct: 685 GSDGPPGHPGKEGPPGTKGN----------QGPSGPQGPLGYPGPRGVKGVDGIRGL--- 731
Query: 302 RIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPEEP 348
+ + E GE G P G G G GE G G+ G DGPE P
Sbjct: 732 -----KGHKGEKGEDGFP--GFKGDIGVKGDRGEVGVPGSRGEDGPEGP 773
Score = 42.7 bits (99), Expect = 6e-04
Identities = 62/221 (28%), Positives = 74/221 (33%), Gaps = 58/221 (26%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGG-- 217
G D G +GEPG+ G + + PGP KR G G+ G G G
Sbjct: 1285 GQDGAKGDRGEDGEPGQPGSPGP-----TGENGPPGPLGKRGPAGSPGSEGRQGGKGAKG 1339
Query: 218 --------GGTGGVG--GGAGSE----------DSGDRGGTLGGGTLGPPSPPGAPSPPE 257
G TG VG G AG G +G G GPP P G P P
Sbjct: 1340 DPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG 1399
Query: 258 PGGEIELV-FRPHPLLV-------EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQ 309
G+ + HP L+ E+GE G+ Q
Sbjct: 1400 LRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSP-----------------GQ 1442
Query: 310 QQEAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGPEEP 348
+ E G PG G GGP G G G GA G GP P
Sbjct: 1443 KGEMGIPG--ASGPIGPGGPPGLPGPAGPKGAKGATGPGGP 1481
Score = 40.8 bits (94), Expect = 0.002
Identities = 35/116 (30%), Positives = 45/116 (38%), Gaps = 22/116 (18%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG D + G G+ G G+ + P GP P P G G+ G G
Sbjct: 1362 PGPDGLRGLPGSVGQQGRPGATGQ-----AGPPGPVGP-PGLPGLRGDAGAKGEKGHPGL 1415
Query: 221 GGVGGGAGSE-DSGDRG-----------GTLG----GGTLGPPSPPGAPSPPEPGG 260
G+ G G + + GDRG G +G G +GP PPG P P P G
Sbjct: 1416 IGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKG 1471
Score = 35.8 bits (81), Expect = 0.071
Identities = 65/240 (27%), Positives = 83/240 (34%), Gaps = 50/240 (20%)
Query: 161 PGSDQTTTMSGGEG--EPGEGEGD-----GEDVSSD-------SAPDSAPGPAPKRPRG- 205
P +D+ GEG +P EG D G+D + SA + G A PRG
Sbjct: 322 PTADRFQAEEYGEGGTDPPEGPYDYTYGYGDDYREETELGPALSAETAHSGAAAHGPRGL 381
Query: 206 ----------------GGAGGSSVGTGGGGTGGVGGGAGSE-DSGDRGGTLGGGTLGPPS 248
G G G G G+ G G D G+RG G G P
Sbjct: 382 KGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPGPVGDPGERGPP---GRAGLPG 438
Query: 249 PPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERR 308
GAP P PG + L FR +KG + + L+
Sbjct: 439 SDGAPGP--PGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQARLALRGPPGPMGYTG 496
Query: 309 QQQEAGEPGGPG--GGASDTG-----GPDGCGGEGGGAG-----GGDGPE-EPALPSLEG 355
+ G+PG PG G + D G GP G G G AG G DG P P ++G
Sbjct: 497 RPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKG 556
Score = 35.4 bits (80), Expect = 0.093
Identities = 66/234 (28%), Positives = 81/234 (34%), Gaps = 38/234 (16%)
Query: 142 EEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPK 201
+E + +A+ R PG T G G+PG GE S D P GP
Sbjct: 470 QEAQAQAILQQARLALRGPPGPMGYTGRPGPLGQPGSPGLKGE--SGDLGPQGPRGPQGL 527
Query: 202 RPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRG--GTLG-GGTLGPPSPPGAPSPPEP 258
G AG G G G+ G G + GDRG G G G G GA P P
Sbjct: 528 TGPPGKAGRRG-RAGADGARGMPGDPGVK--GDRGFDGLPGLPGEKGHRGDTGAQGLPGP 584
Query: 259 GGE--------------IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIA 304
GE + P LL KG G V + + +
Sbjct: 585 PGEDGERGDDGEIGPRGLPGESGPRGLLGPKGP------PGIPGPPGVRGMDGPQGPKGS 638
Query: 305 LERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAG--GGDGPE-EPALPSLEG 355
L + GEPG P G T G G G G G G GP+ +P LP + G
Sbjct: 639 LGPQ-----GEPGPP--GQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPG 685
>gi|24586686 voltage-dependent calcium channel gamma-8 subunit [Homo
sapiens]
Length = 425
Score = 57.8 bits (138), Expect = 2e-08
Identities = 47/126 (37%), Positives = 55/126 (43%), Gaps = 24/126 (19%)
Query: 153 AQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGE--DVSSDSAPDS-APGPAPKRPRGGGAG 209
+ R P P D + GG G PG D +S D + S A G A GGGA
Sbjct: 277 SSRSSEPSPSRDASP---GGPGGPGFASTDISMYTLSRDPSKGSVAAGLAGAGGGGGGAV 333
Query: 210 GSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTL-----------------GPPSPPGA 252
G+ G GG GG GGG G+ DRGG G TL GPP+PP A
Sbjct: 334 GAFGGAAGGAGGGGGGGGGAGAERDRGGASGFLTLHNAFPKEAGGGVTVTVTGPPAPP-A 392
Query: 253 PSPPEP 258
P+PP P
Sbjct: 393 PAPPAP 398
Score = 39.3 bits (90), Expect = 0.006
Identities = 50/173 (28%), Positives = 59/173 (34%), Gaps = 41/173 (23%)
Query: 214 GTGGGGTGGVGGGA----GSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPH 269
G G GG+GG G A S R + PSP SP PGG
Sbjct: 246 GGGAGGSGGSGPSAILRLPSYRFRYRRRSRSSSRSSEPSPSRDASPGGPGGP-------- 297
Query: 270 PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDT-GG 328
G A+ D +S Y R + GG GGGA GG
Sbjct: 298 ------------------GFASTD-ISMYTLSRDPSKGSVAAGLAGAGGGGGGAVGAFGG 338
Query: 329 PDGCGGEGGGAGGGDGPEEPALPSLEGVSEKQYTIYIA----PGGGAFTTLNG 377
G G GGG GGG G E G + T++ A GGG T+ G
Sbjct: 339 AAGGAGGGGGGGGGAGAERD-----RGGASGFLTLHNAFPKEAGGGVTVTVTG 386
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 57.4 bits (137), Expect = 2e-08
Identities = 70/239 (29%), Positives = 91/239 (38%), Gaps = 33/239 (13%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA-PKRPRGGGAGGSSVGTGGGG 219
P + M G G GE GE++ PGP P P G AG + G+G G
Sbjct: 549 PAQREHVGMKGQAGPKGEKGDAGEEL---------PGPPEPSGPVGPTAGAEAEGSGLGW 599
Query: 220 TGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPS-PPEPGGEIELVFRPHPLLVEKGEY 278
VG G+G ++ L G GPP PPG P P +PG ++ P E G
Sbjct: 600 GSDVGSGSGDLVGSEQ---LLRGPPGPPGPPGLPGIPGKPGTDV--FMGPPGSPGEDGPA 654
Query: 279 CQTRYVKTTGNATVDHLSKYLALRIAL-ERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG 337
+ G VD + ++ R GE G PG GP G G+ G
Sbjct: 655 GEPGPPGPEGQPGVDGATGLPGMKGEKGARGPNGSVGEKGDPGN--RGLPGPPGKKGQAG 712
Query: 338 --GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSLTLELVNEKFWKVSRP 394
G G GP P P G + G F GS + +L+NE K+SRP
Sbjct: 713 PPGVMGPPGPPGPPGPPGPGCTM----------GLGFEDTEGSGSTQLLNEP--KLSRP 759
Score = 55.1 bits (131), Expect = 1e-07
Identities = 41/115 (35%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-------PAPKRPRGGGAGGSS 212
IPG T G G PGE GE P+ PG P K +G S
Sbjct: 632 IPGKPGTDVFMGPPGSPGEDGPAGEP--GPPGPEGQPGVDGATGLPGMKGEKGARGPNGS 689
Query: 213 VGTGGG-GTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVF 266
VG G G G+ G G + G G G +GPP PPG P PP PG + L F
Sbjct: 690 VGEKGDPGNRGLPGPPGKK--GQAGPP---GVMGPPGPPGPPGPPGPGCTMGLGF 739
Score = 39.7 bits (91), Expect = 0.005
Identities = 72/274 (26%), Positives = 85/274 (31%), Gaps = 69/274 (25%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAG--------GS 211
PG D T + G +GE G G D PGP K+ + G G G
Sbjct: 666 PGVDGATGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPPGKKGQAGPPGVMGPPGPPGP 725
Query: 212 SVGTGGGGTGGVG----GGAGSE-------------------DSGDRG-----GTLGGGT 243
G G T G+G G+GS + GDRG G G
Sbjct: 726 PGPPGPGCTMGLGFEDTEGSGSTQLLNEPKLSRPTAAIGLKGEKGDRGPKGERGMDGASI 785
Query: 244 LGPPSPPGAP---------------------------SPPEPGGEIELVFRPHPLLVEKG 276
+GPP P G P PP P G L P P KG
Sbjct: 786 VGPPGPRGPPGHIKVLSNSLINITHGFMNFSDIPELVGPPGPDGLPGLPGFPGP-RGPKG 844
Query: 277 EYCQTRYVKTTG-NATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGE 335
+ + G L I LER ++ GEPG GA GP G G
Sbjct: 845 DTGLPGFPGLKGEQGEKGEPGAILTEDIPLERLMGKK-GEPG--MHGAPGPMGPKGPPGH 901
Query: 336 GGGAGGGDGPEEPALPSLEGVSEKQYTIYIAPGG 369
G G P P L L+G I P G
Sbjct: 902 KGEFGLPGRPGRPGLNGLKGTKGDPGVIMQGPPG 935
Score = 38.1 bits (87), Expect = 0.014
Identities = 40/149 (26%), Positives = 50/149 (33%), Gaps = 39/149 (26%)
Query: 161 PGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGPA-------------------- 199
PGS + T G +GE G G + D PGP
Sbjct: 974 PGSPELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPLDLAYLRHFLNNLKGENGDK 1033
Query: 200 ---PKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDS---GDRG--------GTLGGGTLG 245
++ G GS + +G G G G AG + G +G G G G G
Sbjct: 1034 GFKGEKGEKGDINGSFLMSGPPGLPGNPGPAGQKGETVVGPQGPPGAPGLPGPPGFGRPG 1093
Query: 246 PPSPPGAPSPPEP----GGEIELVFRPHP 270
P PPG P PP P G + L P P
Sbjct: 1094 DPGPPGPPGPPGPPAILGAAVALPGPPGP 1122
Score = 37.7 bits (86), Expect = 0.019
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 11/108 (10%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG----PAPKRPRGGGAGGSSVGT 215
+PG G +GEPG + + PG P P P+G G
Sbjct: 848 LPGFPGLKGEQGEKGEPGAILTEDIPLERLMGKKGEPGMHGAPGPMGPKGPPGHKGEFGL 907
Query: 216 GGG-GTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEI 262
G G G+ G G++ GD G + G PP PG P PP P G +
Sbjct: 908 PGRPGRPGLNGLKGTK--GDPGVIMQG----PPGLPGPPGPPGPPGAV 949
Score = 35.4 bits (80), Expect = 0.093
Identities = 35/106 (33%), Positives = 40/106 (37%), Gaps = 15/106 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGS 229
G +GE GE +GD S P PG P P +G G G G G+ G G
Sbjct: 1034 GFKGEKGE-KGDINGSFLMSGPPGLPGNPGPAGQKGETVVGPQ---GPPGAPGLPGPPGF 1089
Query: 230 EDSGDRGGTLGGGTLGPPS----------PPGAPSPPEPGGEIELV 265
GD G G GPP+ PPG P P G LV
Sbjct: 1090 GRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLPGSRNLV 1135
Score = 33.5 bits (75), Expect = 0.35
Identities = 31/100 (31%), Positives = 32/100 (32%), Gaps = 18/100 (18%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGGGAGGSSVGTGGG 218
I GS + G G PG GE V P APG P P G
Sbjct: 1045 INGSFLMSGPPGLPGNPGPAGQKGETVVGPQGPPGAPGLPGPP---------------GF 1089
Query: 219 GTGGVGGGAGSEDSGDRGGTLGGGTL--GPPSPPGAPSPP 256
G G G G LG GPP PPG P P
Sbjct: 1090 GRPGDPGPPGPPGPPGPPAILGAAVALPGPPGPPGQPGLP 1129
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 57.4 bits (137), Expect = 2e-08
Identities = 58/199 (29%), Positives = 76/199 (38%), Gaps = 32/199 (16%)
Query: 170 SGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVGTGGGGTGGVGGGAG 228
SG G PG+ G+D D+ P G P+ PRG G GS G G G G G
Sbjct: 740 SGAMGLPGQEGLPGKD--GDTGPTGPQG--PQGPRGPPGKNGSPGSPGEPGPSGTPGQKG 795
Query: 229 SEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTG 288
S+ G+ G G LGP PPG P G+ + +P + + G
Sbjct: 796 SK--GENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPG----------EPGFKGERG 843
Query: 289 NATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTG--GPDGCGGEGGGAGGGDG 344
+ + ++ G+PG PG G TG GP G GE G G
Sbjct: 844 DPGIKG-----------DKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGP 892
Query: 345 PEEPALPSLEGVSEKQYTI 363
P +P P L G S T+
Sbjct: 893 PGQPGFPGLRGESPSMETL 911
Score = 53.5 bits (127), Expect = 3e-07
Identities = 60/193 (31%), Positives = 74/193 (38%), Gaps = 27/193 (13%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG----GAGGSSVGTGGGGTGGVGGG 226
G GEPGE G++ P P K RG G G G G G G+ G
Sbjct: 813 GPPGEPGEKGVPGKE----GVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGH 868
Query: 227 AGSED-SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK-GEYCQTRYV 284
G G +G G +GPP PPG P P GE + L+ E+ G+ +TR
Sbjct: 869 KGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLA 928
Query: 285 KTTGNATVDHLSKYLALRI--ALERRQQQEAGEPGGPG-GGASDTGGPDGCGGEGGGAGG 341
YL ++ A + Q G PG PG G GP G G G GG
Sbjct: 929 -------------YLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGR-PGQGG 974
Query: 342 GDGPEEPALPSLE 354
+GP P P E
Sbjct: 975 LEGPSGPIGPKGE 987
Score = 50.4 bits (119), Expect = 3e-06
Identities = 63/209 (30%), Positives = 74/209 (35%), Gaps = 36/209 (17%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
IPG + G G PGE GE P+ A GP P G G S G G
Sbjct: 685 IPGEEGKEGRDGKPGPPGEPGKAGEP--GLPGPEGARGP----PGFKGHTGDSGAPGPRG 738
Query: 220 TGGVGGGAGSED----SGDRGGTLGGGTLGPPSPPG----APSPPEPGGEIELVFRPHPL 271
G G G E GD G T G GP PPG SP EPG P
Sbjct: 739 ESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPG--------PSGT 790
Query: 272 LVEKGEYCQTRYVKTTGNATVDHLSKYLALR----IALERRQQQEAGEPGGPG-GGASDT 326
+KG + G L +L R E+ + G PG PG G
Sbjct: 791 PGQKG---------SKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGE 841
Query: 327 GGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G G G+ G GG P +P +P +G
Sbjct: 842 RGDPGIKGDKGPPGGKGQPGDPGIPGHKG 870
Score = 50.1 bits (118), Expect = 4e-06
Identities = 65/205 (31%), Positives = 72/205 (35%), Gaps = 33/205 (16%)
Query: 171 GGEGEPGEGEGDGEDVS-------SDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +GE GE GE+ S D PGP K G G GS G GT G
Sbjct: 428 GKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKG 487
Query: 223 VGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTR 282
G G S G G G GPP P G P G L P P
Sbjct: 488 DRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGP------------ 535
Query: 283 YVKTTGNATVDHLSKYLA----LRIALERRQQQEAGEPGGPG--GGASDTGGPDGCGGEG 336
G A D LS L+ +A + G PG PG G D G P G EG
Sbjct: 536 ----QGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPGREG 591
Query: 337 -GGAGGGDGPEEPALPSLEGVSEKQ 360
G G GP P LP G++ Q
Sbjct: 592 TEGKKGEAGP--PGLPGPPGIAGPQ 614
Score = 47.8 bits (112), Expect = 2e-05
Identities = 55/197 (27%), Positives = 69/197 (35%), Gaps = 40/197 (20%)
Query: 171 GGEGEPGE----GEGDGEDVSSDSAPDSAPGPA--PKRPRGGGAGGSSVGTGGGGTGGVG 224
G +G PGE G APG A P P GA G S G G G+
Sbjct: 365 GLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLR 424
Query: 225 GGAGSE-DSGDRGGTLGGGTLGP------PSPPGAPSPPEPGGEIELVFRPHPLLVEKGE 277
G G + + G++G G+ GP P PG P PP G + E R P L
Sbjct: 425 GTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGP-- 482
Query: 278 YCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG 337
+ T G+ + G G PG G + GP G G+ G
Sbjct: 483 ------LGTKGDRGAPGI--------------PGSPGSRGDPGIGVAGPPGPSGPPGDKG 522
Query: 338 GAG-----GGDGPEEPA 349
G G GP+ PA
Sbjct: 523 SPGSRGLPGFPGPQGPA 539
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 161 PGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGG- 218
PG D +G GEPG G+G E P GP +R G G VG G
Sbjct: 952 PGKDGLPGRAGPMGEPGRPGQGGLE------GPSGPIGPKGERGAKGDPGAPGVGLRGEM 1005
Query: 219 ---GTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIE 263
G G G G G G G GP PG P PP P G+ +
Sbjct: 1006 GPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCD 1053
Score = 44.3 bits (103), Expect = 2e-04
Identities = 59/210 (28%), Positives = 74/210 (35%), Gaps = 35/210 (16%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGP----APKRPRGG-GAGGSSVG 214
PG G +G PG+ +G E ++ P PGP P+ +G GA G
Sbjct: 569 PGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQ 628
Query: 215 TGGGGTGGVGGGAGSEDSGDRGGTLG-GGTLGPPS---PPGAPSPPEPGGEIELVFRPHP 270
G G GV G G + G G G GPP PG PP P G L P
Sbjct: 629 KGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPG- 687
Query: 271 LLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGP 329
E+G+ + G + +AGEPG PG GA G
Sbjct: 688 ---EEGKEGRDGKPGPPG--------------------EPGKAGEPGLPGPEGARGPPGF 724
Query: 330 DGCGGEGGGAGGGDGPEEPALPSLEGVSEK 359
G G+ G G LP EG+ K
Sbjct: 725 KGHTGDSGAPGPRGESGAMGLPGQEGLPGK 754
Score = 41.2 bits (95), Expect = 0.002
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 133 NQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAP 192
+ + L I+E L Q R + +P + M +G PG G+D A
Sbjct: 907 SMETLRRLIQEELGKQLETRLAYLLAQMPPA----YMKSSQGRPGPPGPPGKDGLPGRA- 961
Query: 193 DSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGA 252
P P RP GG G S G G G G G+ G R G +GPP PG
Sbjct: 962 --GPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLR------GEMGPPGIPGQ 1013
Query: 253 PSPP 256
P P
Sbjct: 1014 PGEP 1017
Score = 40.4 bits (93), Expect = 0.003
Identities = 52/198 (26%), Positives = 59/198 (29%), Gaps = 30/198 (15%)
Query: 174 GEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDS- 232
GEPGE DG + RP G G G G G G G +
Sbjct: 250 GEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGEL 309
Query: 233 ------GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV-EKGEYCQTRYVK 285
GDRG G GPP PG S +F PHP + E+G +
Sbjct: 310 GLPGLKGDRGEKGEAGPAGPPGLPGTTS----------LFTPHPRMPGEQGPKGEKGDPG 359
Query: 286 TTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGGPDGCGGEGGGAGG 341
G + L Q G PG G GA G G G G G
Sbjct: 360 LPGEPGLQGRPGELG--------PQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGP 411
Query: 342 GDGPEEPALPSLEGVSEK 359
P P L G K
Sbjct: 412 SGPPGSVGAPGLRGTPGK 429
Score = 37.4 bits (85), Expect = 0.025
Identities = 59/226 (26%), Positives = 73/226 (32%), Gaps = 37/226 (16%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
+PG T G G PG G+ + P PGP+ G G G G
Sbjct: 479 LPGPLGTKGDRGAPGIPGSPGSRGDPGIGVAGP---PGPS-------GPPGDKGSPGSRG 528
Query: 220 TGGVGGGAGSEDSGDRGGTLGGGTLG----------PPSPPGAPSPPEPGGEIELVFRPH 269
G G G L G + PP PPG P P G+ + +P
Sbjct: 529 LPGFPGPQGPAGRDGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPGFKGDKGVPGKPG 588
Query: 270 PLLVE--KGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDT 326
E KGE G A E Q+ + G PG PG G
Sbjct: 589 REGTEGKKGEAGPPGLPGPPGIAGPQ--GSQGERGADGEVGQKGDQGHPGVPGFMGPPGN 646
Query: 327 GGPDGCGGEGGGAG-----------GGDGPEEPA-LPSLEGVSEKQ 360
GP G G G AG G GP+ P+ LP + G K+
Sbjct: 647 PGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEEGKE 692
Score = 33.1 bits (74), Expect = 0.46
Identities = 53/195 (27%), Positives = 62/195 (31%), Gaps = 48/195 (24%)
Query: 161 PGSDQTTTMSGGEGE-PGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
PG TT++ PGE GE D PG RP G G + G G
Sbjct: 330 PGLPGTTSLFTPHPRMPGEQGPKGE--KGDPGLPGEPG-LQGRPGELGPQGPTGPPGAKG 386
Query: 220 TGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYC 279
G G G+ +G+ G G GP PPG+ P G
Sbjct: 387 QEGAHGAPGA--AGNPGAPGHVGAPGPSGPPGSVGAPGLRG------------------- 425
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGGPDGCGGEGG 337
T G ER ++ AGE G PG G D G P G G
Sbjct: 426 ------TPGKDG--------------ERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGK 465
Query: 338 GAGGGDGPE-EPALP 351
G G G P LP
Sbjct: 466 GKDGEPGLRGSPGLP 480
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 57.4 bits (137), Expect = 2e-08
Identities = 58/199 (29%), Positives = 76/199 (38%), Gaps = 32/199 (16%)
Query: 170 SGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVGTGGGGTGGVGGGAG 228
SG G PG+ G+D D+ P G P+ PRG G GS G G G G G
Sbjct: 1293 SGAMGLPGQEGLPGKD--GDTGPTGPQG--PQGPRGPPGKNGSPGSPGEPGPSGTPGQKG 1348
Query: 229 SEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTG 288
S+ G+ G G LGP PPG P G+ + +P + + G
Sbjct: 1349 SK--GENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPG----------EPGFKGERG 1396
Query: 289 NATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTG--GPDGCGGEGGGAGGGDG 344
+ + ++ G+PG PG G TG GP G GE G G
Sbjct: 1397 DPGIKG-----------DKGPPGGKGQPGDPGIPGHKGHTGLMGPQGLPGENGPVGPPGP 1445
Query: 345 PEEPALPSLEGVSEKQYTI 363
P +P P L G S T+
Sbjct: 1446 PGQPGFPGLRGESPSMETL 1464
Score = 53.5 bits (127), Expect = 3e-07
Identities = 60/193 (31%), Positives = 74/193 (38%), Gaps = 27/193 (13%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG----GAGGSSVGTGGGGTGGVGGG 226
G GEPGE G++ P P K RG G G G G G G+ G
Sbjct: 1366 GPPGEPGEKGVPGKE----GVPGKPGEPGFKGERGDPGIKGDKGPPGGKGQPGDPGIPGH 1421
Query: 227 AGSED-SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK-GEYCQTRYV 284
G G +G G +GPP PPG P P GE + L+ E+ G+ +TR
Sbjct: 1422 KGHTGLMGPQGLPGENGPVGPPGPPGQPGFPGLRGESPSMETLRRLIQEELGKQLETRLA 1481
Query: 285 KTTGNATVDHLSKYLALRI--ALERRQQQEAGEPGGPG-GGASDTGGPDGCGGEGGGAGG 341
YL ++ A + Q G PG PG G GP G G G GG
Sbjct: 1482 -------------YLLAQMPPAYMKSSQGRPGPPGPPGKDGLPGRAGPMGEPGR-PGQGG 1527
Query: 342 GDGPEEPALPSLE 354
+GP P P E
Sbjct: 1528 LEGPSGPIGPKGE 1540
Score = 50.4 bits (119), Expect = 3e-06
Identities = 63/209 (30%), Positives = 74/209 (35%), Gaps = 36/209 (17%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
IPG + G G PGE GE P+ A GP P G G S G G
Sbjct: 1238 IPGEEGKEGRDGKPGPPGEPGKAGEP--GLPGPEGARGP----PGFKGHTGDSGAPGPRG 1291
Query: 220 TGGVGGGAGSED----SGDRGGTLGGGTLGPPSPPG----APSPPEPGGEIELVFRPHPL 271
G G G E GD G T G GP PPG SP EPG P
Sbjct: 1292 ESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPG--------PSGT 1343
Query: 272 LVEKGEYCQTRYVKTTGNATVDHLSKYLALR----IALERRQQQEAGEPGGPG-GGASDT 326
+KG + G L +L R E+ + G PG PG G
Sbjct: 1344 PGQKG---------SKGENGSPGLPGFLGPRGPPGEPGEKGVPGKEGVPGKPGEPGFKGE 1394
Query: 327 GGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G G G+ G GG P +P +P +G
Sbjct: 1395 RGDPGIKGDKGPPGGKGQPGDPGIPGHKG 1423
Score = 49.7 bits (117), Expect = 5e-06
Identities = 58/201 (28%), Positives = 74/201 (36%), Gaps = 28/201 (13%)
Query: 171 GGEGEPGE----GEGDGEDVSSDSAPDSAPGPA--PKRPRGGGAGGSSVGTGGGGTGGVG 224
G +G PGE G APG A P P GA G S G G G+
Sbjct: 883 GLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLR 942
Query: 225 GGAGSE-DSGDRGGTLGGGTLGP------PSPPGAPSPPEPGGEIELVFRPHP-LLVEKG 276
G G + + G++G G+ GP P PG P PP G + E R P L G
Sbjct: 943 GTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLG 1002
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGG---PGGGASDTGGPDGCG 333
V+ + N + + +R G PG PG G + GP G
Sbjct: 1003 TKAACGKVRGSENCALG------GQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPP 1056
Query: 334 GEGGGAG-----GGDGPEEPA 349
G+ G G G GP+ PA
Sbjct: 1057 GDKGSPGSRGLPGFPGPQGPA 1077
Score = 47.8 bits (112), Expect = 2e-05
Identities = 74/270 (27%), Positives = 88/270 (32%), Gaps = 61/270 (22%)
Query: 143 EGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEG-----EGDGEDVSSDSAP----- 192
+G R + R ++ R + G +G +G PG +G+ DV P
Sbjct: 589 QGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGS 648
Query: 193 ----------DSAPGP-----APKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGG 237
APGP AP P G G G G G+ G G G
Sbjct: 649 VVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPG 708
Query: 238 TLGGGTLGPPSPPGAPSPPEPG------GEIELVFRPHP--------LLVEKGEYCQTRY 283
LG GPP PPG P PP PG GEI +P P G
Sbjct: 709 LLG--LQGPPGPPGVPGPPGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGT 766
Query: 284 VKTTGNATVDHLSKYLALR-------IALERRQQQEAGEPGGPG-----GGASDTG---- 327
G D L LR +A ++ EAG PG PG G D G
Sbjct: 767 KGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGE 826
Query: 328 ----GPDGCGGEGGGAGGGDGPEEPALPSL 353
G G GE G AG P P SL
Sbjct: 827 LGLPGLKGDRGEKGEAGPAGPPGLPGTTSL 856
Score = 45.1 bits (105), Expect = 1e-04
Identities = 36/108 (33%), Positives = 41/108 (37%), Gaps = 11/108 (10%)
Query: 161 PGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGG- 218
PG D +G GEPG G+G E P GP +R G G VG G
Sbjct: 1505 PGKDGLPGRAGPMGEPGRPGQGGLE------GPSGPIGPKGERGAKGDPGAPGVGLRGEM 1558
Query: 219 ---GTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIE 263
G G G G G G G GP PG P PP P G+ +
Sbjct: 1559 GPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCD 1606
Score = 44.7 bits (104), Expect = 2e-04
Identities = 59/207 (28%), Positives = 67/207 (32%), Gaps = 45/207 (21%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGE-DVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
PG D + M G GE GE GE + P PGP P GA G G G
Sbjct: 541 PGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGP----PGRVGAPGLQGERGEKG 596
Query: 220 TGGVGGGAGSE-------DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
T G G G + D+G +G G GP G P P G V + L
Sbjct: 597 TRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLK 656
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG----GASDTGG 328
E+G A R Q G PG PG G G
Sbjct: 657 GEQG---------------------------APGPRGHQ--GAPGPPGARGPIGPEGRDG 687
Query: 329 PDGCGGEGGGAGGGDGPEEPALPSLEG 355
P G G G G P P L L+G
Sbjct: 688 PPGLQGLRGKKGDMGPPGIPGLLGLQG 714
Score = 44.3 bits (103), Expect = 2e-04
Identities = 59/210 (28%), Positives = 74/210 (35%), Gaps = 35/210 (16%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGP----APKRPRGG-GAGGSSVG 214
PG G +G PG+ +G E ++ P PGP P+ +G GA G
Sbjct: 1122 PGLPGLPGFKGDKGVPGKPGREGTEGKKGEAGPPGLPGPPGIAGPQGSQGERGADGEVGQ 1181
Query: 215 TGGGGTGGVGGGAGSEDSGDRGGTLG-GGTLGPPS---PPGAPSPPEPGGEIELVFRPHP 270
G G GV G G + G G G GPP PG PP P G L P
Sbjct: 1182 KGDQGHPGVPGFMGPPGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPG- 1240
Query: 271 LLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGP 329
E+G+ + G + +AGEPG PG GA G
Sbjct: 1241 ---EEGKEGRDGKPGPPG--------------------EPGKAGEPGLPGPEGARGPPGF 1277
Query: 330 DGCGGEGGGAGGGDGPEEPALPSLEGVSEK 359
G G+ G G LP EG+ K
Sbjct: 1278 KGHTGDSGAPGPRGESGAMGLPGQEGLPGK 1307
Score = 43.5 bits (101), Expect = 3e-04
Identities = 65/239 (27%), Positives = 79/239 (33%), Gaps = 29/239 (12%)
Query: 142 EEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDG-EDVSSDSAPDSAPGPAP 200
+EGL+ + R + PG G EG G G D P PG
Sbjct: 652 QEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLG 711
Query: 201 KRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG----GGTLGPPSPPGAPSPP 256
+ G G G GG+ G+ G G G G G GPP PPG P
Sbjct: 712 LQGPPGPPGVPGP-PGPGGSPGLPGEIGFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEP 770
Query: 257 EPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEP 316
GE L +P L E GE G A + + +R E+ Q E GE
Sbjct: 771 GERGEDGLPGKP-GLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVR--GEKGDQGEKGEL 827
Query: 317 GGPG-------GGASDTGGPDG-------------CGGEGGGAGGGDGPEEPALPSLEG 355
G PG G + GP G GE G G P P P L+G
Sbjct: 828 GLPGLKGDRGEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQG 886
Score = 41.6 bits (96), Expect = 0.001
Identities = 70/243 (28%), Positives = 85/243 (34%), Gaps = 42/243 (17%)
Query: 157 RRPIPGSDQ-----TTTMSGGEGEPGEG--------EGDGEDVSSDSAPDSAPGPAPKR- 202
R P PGS+Q T S GE GE G D+ + P APGP ++
Sbjct: 459 RPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPGPKGDIGA-IGPVGAPGPKGEKG 517
Query: 203 -----PRGGGAGGSSVGTGGGGTGGVGGGAGSE----DSGDRGGTLGGGTLGPPSPPGAP 253
P G G G G G G G G + G+ G G GP PPG P
Sbjct: 518 DVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLP 577
Query: 254 SPP----EPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIAL-ERR 308
PP PG + E EKGE + G+ + E+
Sbjct: 578 GPPGRVGAPGLQGER--GEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPSGVAGPQGEKG 635
Query: 309 QQQEAGEPGGPGG--------GASDTGGPDGCGGEGG--GAGGGDGPE-EPALPSLEGVS 357
AG PG PG G GP G G G GA G GPE P L+G+
Sbjct: 636 DVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLR 695
Query: 358 EKQ 360
K+
Sbjct: 696 GKK 698
Score = 41.2 bits (95), Expect = 0.002
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 133 NQQALSSSIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAP 192
+ + L I+E L Q R + +P + M +G PG G+D A
Sbjct: 1460 SMETLRRLIQEELGKQLETRLAYLLAQMPPA----YMKSSQGRPGPPGPPGKDGLPGRA- 1514
Query: 193 DSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGA 252
P P RP GG G S G G G G G+ G R G +GPP PG
Sbjct: 1515 --GPMGEPGRPGQGGLEGPSGPIGPKGERGAKGDPGAPGVGLR------GEMGPPGIPGQ 1566
Query: 253 PSPP 256
P P
Sbjct: 1567 PGEP 1570
Score = 40.4 bits (93), Expect = 0.003
Identities = 55/215 (25%), Positives = 66/215 (30%), Gaps = 55/215 (25%)
Query: 161 PGSDQTTTMSGGEGEPGE-------------GEGDGEDVSSDSAPDSAPGPAPKRPRGGG 207
PG G G PGE GD ++ D D PGP G
Sbjct: 1071 PGPQGPAGRDGAPGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPP-------G 1123
Query: 208 AGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR 267
G G G G G G+E G G PPG P PP G
Sbjct: 1124 LPGLPGFKGDKGVPGKPGREGTE-----------GKKGEAGPPGLPGPPGIAG------- 1165
Query: 268 PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG-GASDT 326
P E+G + G+ V G PG PG G +
Sbjct: 1166 PQGSQGERGADGEVGQKGDQGHPGVPGF--------------MGPPGNPGPPGADGIAGA 1211
Query: 327 GGPDGCGGEGGGAGGGDGPEEPA-LPSLEGVSEKQ 360
GP G G G G GP+ P+ LP + G K+
Sbjct: 1212 AGPPGIQG-SPGKEGPPGPQGPSGLPGIPGEEGKE 1245
Score = 35.4 bits (80), Expect = 0.093
Identities = 51/188 (27%), Positives = 66/188 (35%), Gaps = 27/188 (14%)
Query: 183 GEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSVGTGGGGTGGVGGGAGSEDSGDR 235
G+ V D PG R G G G G G+ G+ G G + R
Sbjct: 1020 GQCVKGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGR 1079
Query: 236 GGTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDH 294
G G G GPP PG S P G+I L+ + + C G +
Sbjct: 1080 DGAPGNPGERGPPGKPGLSSLLSP-GDINLLAK---------DVCNDCPPGPPGLPGLPG 1129
Query: 295 L--SKYLALRIALE--RRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAG--GGDGPE-E 347
K + + E ++ EAG PG P G GP G GE G G G G +
Sbjct: 1130 FKGDKGVPGKPGREGTEGKKGEAGPPGLP--GPPGIAGPQGSQGERGADGEVGQKGDQGH 1187
Query: 348 PALPSLEG 355
P +P G
Sbjct: 1188 PGVPGFMG 1195
Score = 33.1 bits (74), Expect = 0.46
Identities = 53/195 (27%), Positives = 62/195 (31%), Gaps = 48/195 (24%)
Query: 161 PGSDQTTTMSGGEGE-PGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
PG TT++ PGE GE D PG RP G G + G G
Sbjct: 848 PGLPGTTSLFTPHPRMPGEQGPKGE--KGDPGLPGEPG-LQGRPGELGPQGPTGPPGAKG 904
Query: 220 TGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYC 279
G G G+ +G+ G G GP PPG+ P G
Sbjct: 905 QEGAHGAPGA--AGNPGAPGHVGAPGPSGPPGSVGAPGLRG------------------- 943
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGGPDGCGGEGG 337
T G ER ++ AGE G PG G D G P G G
Sbjct: 944 ------TPGKDG--------------ERGEKGAAGEEGSPGPVGPRGDPGAPGLPGPPGK 983
Query: 338 GAGGGDGPE-EPALP 351
G G G P LP
Sbjct: 984 GKDGEPGLRGSPGLP 998
Score = 32.7 bits (73), Expect = 0.60
Identities = 59/211 (27%), Positives = 72/211 (34%), Gaps = 33/211 (15%)
Query: 159 PIPGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTG 216
P G D + G G PG G S + G K RG G GS G
Sbjct: 981 PGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRG 1040
Query: 217 GGGTGGVGGGAGSEDSGDRG--GTLG-GGTLGPPSPPGAP-SPPEPGGEIELVFRPHPLL 272
G G G S GD+G G+ G G GP P G +P PG
Sbjct: 1041 DPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPG------------- 1087
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGGPD 330
E+G + ++ L+K + G PG PG G D G P
Sbjct: 1088 -ERGPPGKPGLSSLLSPGDINLLAKDVC--------NDCPPGPPGLPGLPGFKGDKGVPG 1138
Query: 331 GCGGEG-GGAGGGDGPEEPALPSLEGVSEKQ 360
G EG G G GP P LP G++ Q
Sbjct: 1139 KPGREGTEGKKGEAGP--PGLPGPPGIAGPQ 1167
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 57.0 bits (136), Expect = 3e-08
Identities = 39/102 (38%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 170 SGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGS 229
SG +G PG GE P A GPA R G GS+ G G G+ G G
Sbjct: 1114 SGLQGPPGPPGSPGEQ-----GPSGASGPAGPR----GPPGSAGAPGKDGLNGLPGPIGP 1164
Query: 230 EDSGDRGGTLGGGTLGPPSPPGAPSPP-EPGGEIELVFRPHP 270
G RG T G +GPP PPG P PP P + F P P
Sbjct: 1165 P--GPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQP 1204
Score = 53.9 bits (128), Expect = 3e-07
Identities = 59/204 (28%), Positives = 68/204 (33%), Gaps = 39/204 (19%)
Query: 161 PGSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGPA-PKRPRGG-GAGGSSVGTGG 217
PG G +G+PG +GE D+ P GPA P P G GA G+ G
Sbjct: 808 PGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGS 867
Query: 218 GGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGE 277
G G G G+ G +GPP P G PP P G P KG
Sbjct: 868 AGPPGATGFPGA-----------AGRVGPPGPSGNAGPPGPPG-------PAGKEGGKGP 909
Query: 278 YCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG----GASDTGGPDGCG 333
+T G AGE G PG GA T GP G
Sbjct: 910 RGETGPAGRPGEVGPPG--------------PPGPAGEKGSPGADGPAGAPGTPGPQGIA 955
Query: 334 GEGGGAGGGDGPEEPALPSLEGVS 357
G+ G G E P L G S
Sbjct: 956 GQRGVVGLPGQRGERGFPGLPGPS 979
Score = 53.9 bits (128), Expect = 3e-07
Identities = 63/205 (30%), Positives = 72/205 (35%), Gaps = 37/205 (18%)
Query: 154 QRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSV 213
QR R PG + G GEPG+ G S + P GP P G G S
Sbjct: 966 QRGERGFPG------LPGPSGEPGKQGPSG--ASGERGPPGPMGP----PGLAGPPGESG 1013
Query: 214 GTGGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G G GS + GDRG T G G P PGAP P P G
Sbjct: 1014 REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG------------ 1061
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-------GGASD 325
+ G+ +T G V + R + E GE G G G
Sbjct: 1062 -KSGDRGETGPAGPAG--PVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQG 1118
Query: 326 TGGPDGCGGEGG--GAGGGDGPEEP 348
GP G GE G GA G GP P
Sbjct: 1119 PPGPPGSPGEQGPSGASGPAGPRGP 1143
Score = 51.6 bits (122), Expect = 1e-06
Identities = 54/189 (28%), Positives = 65/189 (34%), Gaps = 22/189 (11%)
Query: 171 GGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGGGGTGGVG 224
G G PGE G+ + + APGPA R G GA G TG G G
Sbjct: 287 GEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFP 346
Query: 225 GGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYV 284
G G++ G+ G G+ GP G P PP P G P G Q
Sbjct: 347 GAVGAK--GEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP-------GADGQPGAK 397
Query: 285 KTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG----GAG 340
G + + R Q G P GP G + + G P G G G
Sbjct: 398 GANGAPGIAGAPGFPGAR---GPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPV 454
Query: 341 GGDGPEEPA 349
G GP PA
Sbjct: 455 GVQGPPGPA 463
Score = 51.2 bits (121), Expect = 2e-06
Identities = 57/194 (29%), Positives = 67/194 (34%), Gaps = 24/194 (12%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAG--GSSVGTGGG 218
PG D ++G G PG G+ +S P GP R G G G G
Sbjct: 757 PGKDGVRGLTGPIGPPGPAGAPGD--KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFA 814
Query: 219 GTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEY 278
G G G G++ G+ G G GPP P G PP P G + KG
Sbjct: 815 GPPGADGQPGAK--GEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAP-------GAKGAR 865
Query: 279 CQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG-GPDGCGGEGG 337
TG A R+ AG PG PG + G GP G G G
Sbjct: 866 GSAGPPGATGFPGA-------AGRVG-PPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAG 917
Query: 338 GAG--GGDGPEEPA 349
G G GP PA
Sbjct: 918 RPGEVGPPGPPGPA 931
Score = 50.4 bits (119), Expect = 3e-06
Identities = 69/261 (26%), Positives = 83/261 (31%), Gaps = 70/261 (26%)
Query: 161 PGSDQTTTMSGGEGEPGE----------GEGDGEDVSSDSAPDSAPGPAPKR-------- 202
PG+ + +G +GEPG GE + P PGP +R
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF 495
Query: 203 PRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG----------------GGTLGP 246
P G G G G+ G G GS R G G G GP
Sbjct: 496 PGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGP 555
Query: 247 PSP------PGAPSPPEPGGEIELVFRPHPLLV-----EKGEYCQTRYVKTTGNATVDHL 295
P P PG P PP G+ ++ P P + GE G A D
Sbjct: 556 PGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGE 615
Query: 296 SKYLA----LRIALERRQQQEAGEPG-----GPGGGASDTG--------------GPDGC 332
+ A ER +Q AG PG GP G + G GP G
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA 675
Query: 333 GGEGG--GAGGGDGPEEPALP 351
GE G G G GP PA P
Sbjct: 676 RGERGFPGERGVQGPPGPAGP 696
Score = 49.7 bits (117), Expect = 5e-06
Identities = 60/203 (29%), Positives = 73/203 (35%), Gaps = 40/203 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG +G G PG DG+ + + + APG A P GA G S G GG
Sbjct: 373 PGPPGPAGAAGPAGNPG---ADGQPGAKGA--NGAPGIAGA-PGFPGARGPSGPQGPGGP 426
Query: 221 GGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYC 279
G G +G + G +G T G G P P G PP P GE +GE
Sbjct: 427 PGPKGNSGEPGAPGSKGDT---GAKGEPGPVGVQGPPGPAGE-------EGKRGARGEPG 476
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG-----GPGGGASDTGGPDGCGG 334
T G ER G PG GP G A + G P G G
Sbjct: 477 PTGLPGPPG-----------------ERGGPGSRGFPGADGVAGPKGPAGERGSP-GPAG 518
Query: 335 EGGGAGGGDGPEEPALPSLEGVS 357
G G P E LP +G++
Sbjct: 519 PKGSPGEAGRPGEAGLPGAKGLT 541
Score = 46.2 bits (108), Expect = 5e-05
Identities = 59/209 (28%), Positives = 69/209 (33%), Gaps = 48/209 (22%)
Query: 155 RVRRPIPGSDQTTTMSGGEGEPGEGEGDGED-VSSDSAPDSAPGPAPKRPRGGGAGGSSV 213
R R PG G G G G D D+ APG + P G G
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPG-SQGAPGLQGMPGERG 734
Query: 214 GTGGGGTGGVGGGA---GSEDSGDRGGTLG-GGTLGPPSPPGAPSPPEPGGEIELVFRPH 269
G G G G A G++ S + G G G +GPP P GAP
Sbjct: 735 AAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPG--------------- 779
Query: 270 PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASD 325
+KGE + TG R + GEPG PG G
Sbjct: 780 ----DKGESGPSGPAGPTG-----------------ARGAPGDRGEPGPPGPAGFAGPPG 818
Query: 326 TGGPDGCGGEGGGAG--GGDGPEEPALPS 352
G G GE G AG G GP PA P+
Sbjct: 819 ADGQPGAKGEPGDAGAKGDAGPPGPAGPA 847
Score = 44.7 bits (104), Expect = 2e-04
Identities = 51/202 (25%), Positives = 68/202 (33%), Gaps = 51/202 (25%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG+ +G G PG S ++ P PGPA K GG G G
Sbjct: 871 PGATGFPGAAGRVGPPGP--------SGNAGPPGPPGPAGKE---GGKGPRGETGPAGRP 919
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G VG +G++G G GP PG P P G+ +V P G+ +
Sbjct: 920 GEVGPPGPPGPAGEKGSP---GADGPAGAPGTPGPQGIAGQRGVVGLP-------GQRGE 969
Query: 281 TRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG-----GPDGCG 333
+ G +GEPG GP G + + G GP G
Sbjct: 970 RGFPGLPG-----------------------PSGEPGKQGPSGASGERGPPGPMGPPGLA 1006
Query: 334 GEGGGAGGGDGPEEPALPSLEG 355
G G +G P P +G
Sbjct: 1007 GPPGESGREGAPGAEGSPGRDG 1028
Score = 43.9 bits (102), Expect = 3e-04
Identities = 60/207 (28%), Positives = 68/207 (32%), Gaps = 46/207 (22%)
Query: 164 DQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGV 223
D+T G E GE PD + P + G G TG G G
Sbjct: 76 DETKNCPGAEVPEGE--------CCPVCPDGSESPTDQETTG--VEGPKGDTGPRGPRGP 125
Query: 224 GGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTR 282
G G R G G G GPP PPG P PP GG F P Q
Sbjct: 126 AGPPG------RDGIPGQPGLPGPPGPPGPPGPPGLGGN----FAP-----------QLS 164
Query: 283 Y---VKTTGNATVDHLSKYLALR-------IALERRQQQEAGEPGGPGG----GASDTGG 328
Y K+TG +V R + Q GEPG PG G G
Sbjct: 165 YGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPG 224
Query: 329 PDGCGGEGGGAGGGDGPEEPALPSLEG 355
P G G+ G AG P E P +G
Sbjct: 225 PPGKNGDDGEAGKPGRPGERGPPGPQG 251
Score = 43.9 bits (102), Expect = 3e-04
Identities = 58/209 (27%), Positives = 68/209 (32%), Gaps = 47/209 (22%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG+ + G +G PGE G D+ P A P G G + G G
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP 774
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G G G +SG G G G P G P PP P G F P G Q
Sbjct: 775 AGAPGDKG--ESGPSGPAGPTGARGAPGDRGEPGPPGPAG-----FAGPP-----GADGQ 822
Query: 281 TRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGG--------------GAS 324
G+A + +AG PG GP G GA
Sbjct: 823 PGAKGEPGDAGA-----------------KGDAGPPGPAGPAGPPGPIGNVGAPGAKGAR 865
Query: 325 DTGGPDGCGGEGGGAG--GGDGPEEPALP 351
+ GP G G G AG G GP A P
Sbjct: 866 GSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Score = 43.5 bits (101), Expect = 3e-04
Identities = 58/210 (27%), Positives = 71/210 (33%), Gaps = 24/210 (11%)
Query: 161 PGSDQTTTMSGGEGEPGE-GEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
PG D G G PG G + + AP + G K G G +G G
Sbjct: 129 PGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRG 188
Query: 220 TGGVGGGAGSED----SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEK 275
G G G + G+ G G +GP PPG P GE RP E+
Sbjct: 189 LPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPG----ER 244
Query: 276 GEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEA-----GEPGGPG-GGASDTGGP 329
G G A + + + L+ + GEPG PG GA GP
Sbjct: 245 GPPGPQGARGLPGTAGLPGMKGHRGFS-GLDGAKGDAGPAGPKGEPGSPGENGAPGQMGP 303
Query: 330 DGCGGEGG--------GAGGGDGPEEPALP 351
G GE G GA G DG A P
Sbjct: 304 RGLPGERGRPGAPGPAGARGNDGATGAAGP 333
Score = 42.4 bits (98), Expect = 8e-04
Identities = 56/197 (28%), Positives = 63/197 (31%), Gaps = 25/197 (12%)
Query: 162 GSDQTTTMSGGEGEPGEGEGDGED-VSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
GS + G G PGE GE V D APGP+ R G G V G
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLG---APGPSGARGERGFPGERGVQGPPGPA 694
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQ 280
G G + G +G G G P GAP GE P P KG+
Sbjct: 695 GPRGANGAPGNDGAKGDA---GAPGAPGSQGAPGLQGMPGERGAAGLPGP----KGDRGD 747
Query: 281 TRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG--GPDGCGGEGGG 338
G+ D + R G P GP G D G GP G G G
Sbjct: 748 AGPKGADGSPGKDGV-----------RGLTGPIGPP-GPAGAPGDKGESGPSGPAGPTGA 795
Query: 339 AGGGDGPEEPALPSLEG 355
G EP P G
Sbjct: 796 RGAPGDRGEPGPPGPAG 812
Score = 41.2 bits (95), Expect = 0.002
Identities = 55/217 (25%), Positives = 67/217 (30%), Gaps = 49/217 (22%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGG 217
R +PG+ M G G G G+ + + P PG + G G + G
Sbjct: 253 RGLPGTAGLPGMKGHRGFSGLDGAKGD--AGPAGPKGEPGSPGENGAPGQMGPRGL-PGE 309
Query: 218 GGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKG 276
G G G AG+ + G G G GP PPG P GE P +G
Sbjct: 310 RGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA----GPQGPRGSEG 365
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGCGGE 335
Q GEPG PG GA+ G G G+
Sbjct: 366 --------------------------------PQGVRGEPGPPGPAGAAGPAGNPGADGQ 393
Query: 336 GGGAGGGDGP---EEPALPSLEGVSEKQYTIYIAPGG 369
G G P P P G S Q PGG
Sbjct: 394 PGAKGANGAPGIAGAPGFPGARGPSGPQ-----GPGG 425
Score = 39.7 bits (91), Expect = 0.005
Identities = 34/106 (32%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA-PKRPRGG----GAGGSSVGT 215
PG+ +G G+ GE G + P A GPA P+ PRG G G
Sbjct: 1051 PGAPGPVGPAGKSGDRGETGPAGP--AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIK 1108
Query: 216 GGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAPSPPEPGG 260
G G G+ G G S G++G + G GP PPG+ P G
Sbjct: 1109 GHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDG 1154
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 303 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 362
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 421
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 480
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 516
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 433 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 491
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 492 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 546
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 547 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 586
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 587 PKGEAGLDGAKG 598
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 361 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 417
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 418 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 477
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 478 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 527
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 528 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 574
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 551 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 603
Query: 231 -DSGDRG--GTLGGGTL-GPPSPPGAPSP---PEPGG 260
+ GDRG G G L G P PPG P P P P G
Sbjct: 604 GEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG 640
Score = 42.4 bits (98), Expect = 8e-04
Identities = 60/206 (29%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 475 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 533
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G ++ V P
Sbjct: 534 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG-LQGVPGPKGEAG 592
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
G + + G+ L L G PG PG G GP G
Sbjct: 593 LDGAKGEKGFQGEKGDRGPLGLPGASGL-----------DGRPGPPGTPGPIGVPGPAGP 641
Query: 333 GGEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 642 KGERGSKGDPGMTGPTGAAGLPGLHG 667
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 48/233 (20%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGGGAGGSS 212
RR G ++ G G PG G + P PGP P G G
Sbjct: 256 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP----PGPKGDPGIQ 311
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G+ G G + G G G P PG G L LL
Sbjct: 312 GYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGL----PGLL 367
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGG 328
+KGE GN+ I R + G PG PG G G
Sbjct: 368 GQKGE------KGDAGNS------------IGGGRGEPGPPGLPGPPGPKGEAGVDGQVG 409
Query: 329 PDGCGGEGG--GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSL 379
P G G+ G GA G GP+ P E PG G NG++
Sbjct: 410 PPGQPGDKGERGAAGEQGPDGPKGSKGE------------PGKGEMVDYNGNI 450
Score = 37.7 bits (86), Expect = 0.019
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 584 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 643
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
RG G G + TG G G+ G G D G+RG G+ GP G P
Sbjct: 644 ERGSKGDPGMTGPTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 696
Score = 33.9 bits (76), Expect = 0.27
Identities = 50/171 (29%), Positives = 56/171 (32%), Gaps = 35/171 (20%)
Query: 195 APGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAP 253
AP P KR G + G G G G +G LG G GP PPG P
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGP---------LGHPGLPGPMGPPGLP 299
Query: 254 SPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEA 313
PP P KG+ Y G + + + A
Sbjct: 300 GPPGP----------------KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMK 343
Query: 314 GEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
GEPG PG G G P G GE G AG G G EP P L G
Sbjct: 344 GEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 394
Score = 32.7 bits (73), Expect = 0.60
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G +GE G GE D P P G G G G
Sbjct: 576 PGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGP---LGLPGASGLDGRPGPPGTPGP 632
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
GV G AG + G+RG G GP G P P G+
Sbjct: 633 IGVPGPAGPK--GERGSKGDPGMTGPTGAAGLPGLHGPPGD 671
Score = 32.0 bits (71), Expect = 1.0
Identities = 51/202 (25%), Positives = 63/202 (31%), Gaps = 42/202 (20%)
Query: 191 APDSAPG----PAPKRPRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRG-----GTLG 240
AP ++PG P P P G G G G G G G AG G RG GT G
Sbjct: 110 APKTSPGCNCPPGPPGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Query: 241 -------------------GGTLGPPSPPGAPSPPEPGGEI-ELVFRPH-------PLLV 273
G +G PPG P P GE + PH P +
Sbjct: 170 FPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAAL 229
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCG 333
+ + + + + E+ Q G PG PG GP G
Sbjct: 230 RSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPG-----PPGPSGPL 284
Query: 334 GEGGGAGGGDGPEEPALPSLEG 355
G G G P P P +G
Sbjct: 285 GHPGLPGPMGPPGLPGPPGPKG 306
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 252 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 311
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 312 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 370
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 371 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 429
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 430 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 465
Score = 49.7 bits (117), Expect = 5e-06
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGG-GAGGSSVGTGGG 218
PG D + G G PG GE + A PG P P+ P G G G G
Sbjct: 466 PGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEA 525
Query: 219 GTGGVGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
G G G G + + GDRG G G P P G P P P GE
Sbjct: 526 GLDGAKGEKGFQGEKGDRGPL---GLPGTPGPIGVPGPAGPKGE 566
Score = 47.0 bits (110), Expect = 3e-05
Identities = 61/201 (30%), Positives = 69/201 (34%), Gaps = 41/201 (20%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVGTGGGG 219
PG+ G G PG DGE D P P P+ P G G G G G
Sbjct: 424 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 482
Query: 220 TGGVGGGAGSEDSGDRGGTLGG--GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGE 277
+ G G G ++G G + G G GPP PPG P P GE L EKG
Sbjct: 483 SPGEKGEKG--ETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGL----DGAKGEKG- 535
Query: 278 YCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGG 337
E+ + G PG P G GP G GE G
Sbjct: 536 -------------------------FQGEKGDRGPLGLPGTP--GPIGVPGPAGPKGERG 568
Query: 338 GAG--GGDGPEEPA-LPSLEG 355
G G GP A LP L G
Sbjct: 569 SKGDPGMTGPTGAAGLPGLHG 589
Score = 41.6 bits (96), Expect = 0.001
Identities = 57/188 (30%), Positives = 69/188 (36%), Gaps = 37/188 (19%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 382 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 440
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 441 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGET-- 493
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGGPDGCGGEGG-- 337
+ V L G PG PG G G DG GE G
Sbjct: 494 --GQAGSPVPGL--------------PGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQ 537
Query: 338 GAGGGDGP 345
G G GP
Sbjct: 538 GEKGDRGP 545
Score = 40.8 bits (94), Expect = 0.002
Identities = 63/234 (26%), Positives = 77/234 (32%), Gaps = 63/234 (26%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 310 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 366
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 367 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 426
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G Q
Sbjct: 427 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPG--------------------PQG 464
Query: 312 EAGEPGGPG----GGASDTGGPDGCGGEGGGAG----GGDGPE-EPALPSLEGV 356
G+ G PG G + G G GE G AG G GPE P P L+GV
Sbjct: 465 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGV 518
Score = 36.6 bits (83), Expect = 0.042
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 160 IPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGPA-PKRPRGG-GAGGSSV 213
+PG + G +GE G +G+ + P PGPA PK RG G G +
Sbjct: 518 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTG 577
Query: 214 GTGGGGTGGVGGGAGSEDSGDRG 236
TG G G+ G G D G+RG
Sbjct: 578 PTGAAGLPGLHGPPG--DKGNRG 598
Score = 34.3 bits (77), Expect = 0.21
Identities = 57/214 (26%), Positives = 71/214 (33%), Gaps = 25/214 (11%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGG------- 210
R PG + G G PG +GD + P PGP ++ G G
Sbjct: 139 RGFPGFPGPIGLDGKPGHPGP-KGD----MGLTGPPGQPGPQGQKGEKGQCGEYPHRECL 193
Query: 211 SSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP 270
SS+ + + + +G G GP P G P P P G L P P
Sbjct: 194 SSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGP 253
Query: 271 LLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGG 328
KG+ Y G + + + A GEPG PG G G
Sbjct: 254 ----KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGS 309
Query: 329 PD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
P G GE G AG G G EP P L G
Sbjct: 310 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 343
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 241 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 300
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 301 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 359
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 360 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 418
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 419 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 454
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 371 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 429
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 430 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 484
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 485 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 524
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 525 PKGEAGLDGAKG 536
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 299 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 355
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 356 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 415
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 416 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 465
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 466 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 512
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 489 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 541
Query: 231 -DSGDRG--GTLGGGTL-GPPSPPGAPSP---PEPGG 260
+ GDRG G G L G P PPG P P P P G
Sbjct: 542 GEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG 578
Score = 42.4 bits (98), Expect = 8e-04
Identities = 58/208 (27%), Positives = 68/208 (32%), Gaps = 32/208 (15%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGG 217
R PG + G G PG +GD + P PGP ++ G G G
Sbjct: 147 RGFPGFPGPIGLDGKPGHPGP-KGD----MGLTGPPGQPGPQGQKGEKGQCG-EYPHRGE 200
Query: 218 GGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKG 276
+ G G G LG G GP PPG P PP P KG
Sbjct: 201 QSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGP----------------KG 244
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGGPD---- 330
+ Y G + + + A GEPG PG G G P
Sbjct: 245 DPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGL 304
Query: 331 -GCGGEGGGAGG--GDGPEEPALPSLEG 355
G GE G AG G G EP P L G
Sbjct: 305 LGQKGEKGDAGNSIGGGRGEPGPPGLPG 332
Score = 42.4 bits (98), Expect = 8e-04
Identities = 60/206 (29%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 413 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 471
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G ++ V P
Sbjct: 472 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG-LQGVPGPKGEAG 530
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
G + + G+ L L G PG PG G GP G
Sbjct: 531 LDGAKGEKGFQGEKGDRGPLGLPGASGL-----------DGRPGPPGTPGPIGVPGPAGP 579
Query: 333 GGEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 580 KGERGSKGDPGMTGPTGAAGLPGLHG 605
Score = 37.7 bits (86), Expect = 0.019
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 522 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 581
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
RG G G + TG G G+ G G D G+RG G+ GP G P
Sbjct: 582 ERGSKGDPGMTGPTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 634
Score = 32.7 bits (73), Expect = 0.60
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G +GE G GE D P P G G G G
Sbjct: 514 PGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGP---LGLPGASGLDGRPGPPGTPGP 570
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
GV G AG + G+RG G GP G P P G+
Sbjct: 571 IGVPGPAGPK--GERGSKGDPGMTGPTGAAGLPGLHGPPGD 609
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 243 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 302
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 303 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 361
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 362 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 420
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 421 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 456
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 373 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 431
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 432 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 486
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 487 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 526
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 527 PKGEAGLDGAKG 538
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 301 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 357
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 358 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 417
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 418 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 467
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 468 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 514
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 491 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 543
Query: 231 -DSGDRG--GTLGGGTL-GPPSPPGAPSP---PEPGG 260
+ GDRG G G L G P PPG P P P P G
Sbjct: 544 GEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG 580
Score = 42.4 bits (98), Expect = 8e-04
Identities = 60/206 (29%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 415 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 473
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G ++ V P
Sbjct: 474 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG-LQGVPGPKGEAG 532
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
G + + G+ L L G PG PG G GP G
Sbjct: 533 LDGAKGEKGFQGEKGDRGPLGLPGASGL-----------DGRPGPPGTPGPIGVPGPAGP 581
Query: 333 GGEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 582 KGERGSKGDPGMTGPTGAAGLPGLHG 607
Score = 37.7 bits (86), Expect = 0.019
Identities = 40/123 (32%), Positives = 50/123 (40%), Gaps = 21/123 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 524 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 583
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAP--SPPEP 258
RG G G + TG G G+ G G + + G+RG G G GAP P P
Sbjct: 584 ERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCP 643
Query: 259 GGE 261
GE
Sbjct: 644 LGE 646
Score = 35.4 bits (80), Expect = 0.093
Identities = 61/243 (25%), Positives = 82/243 (33%), Gaps = 26/243 (10%)
Query: 130 RLHNQQALSS-SIEEGLRMQAMHRAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSS 188
+LH+++ + G + + Q R PG + G G PG +GD
Sbjct: 101 KLHSRRRREAPKTSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGP-KGD----MG 155
Query: 189 DSAPDSAPGPAPKRPRGGGAGG-------SSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG 241
+ P PGP ++ G G SS+ + + + +G
Sbjct: 156 LTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPP 215
Query: 242 GTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLAL 301
G GP P G P P P G L P P KG+ Y G + +
Sbjct: 216 GPPGPSGPLGHPGLPGPMGPPGLPGPPGP----KGDPGIQGYHGRKGERGMPGMPGKHGA 271
Query: 302 RIALERRQQQEAGEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPS 352
+ A GEPG PG G G P G GE G AG G G EP P
Sbjct: 272 KGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPG 331
Query: 353 LEG 355
L G
Sbjct: 332 LPG 334
Score = 32.7 bits (73), Expect = 0.60
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G +GE G GE D P P G G G G
Sbjct: 516 PGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGP---LGLPGASGLDGRPGPPGTPGP 572
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
GV G AG + G+RG G GP G P P G+
Sbjct: 573 IGVPGPAGPK--GERGSKGDPGMTGPTGAAGLPGLHGPPGD 611
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 246 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 305
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 306 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 364
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 365 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 423
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 424 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 459
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 376 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 434
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 435 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 489
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 490 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 529
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 530 PKGEAGLDGAKG 541
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 304 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 360
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 361 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 420
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 421 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 470
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 471 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 517
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 494 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 546
Query: 231 -DSGDRG--GTLGGGTL-GPPSPPGAPSP---PEPGG 260
+ GDRG G G L G P PPG P P P P G
Sbjct: 547 GEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG 583
Score = 42.4 bits (98), Expect = 8e-04
Identities = 60/206 (29%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 418 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 476
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G ++ V P
Sbjct: 477 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG-LQGVPGPKGEAG 535
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
G + + G+ L L G PG PG G GP G
Sbjct: 536 LDGAKGEKGFQGEKGDRGPLGLPGASGL-----------DGRPGPPGTPGPIGVPGPAGP 584
Query: 333 GGEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 585 KGERGSKGDPGMTGPTGAAGLPGLHG 610
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 48/233 (20%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGGGAGGSS 212
RR G ++ G G PG G + P PGP P G G
Sbjct: 199 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP----PGPKGDPGIQ 254
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G+ G G + G G G P PG G L LL
Sbjct: 255 GYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGL----PGLL 310
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGG 328
+KGE GN+ I R + G PG PG G G
Sbjct: 311 GQKGE------KGDAGNS------------IGGGRGEPGPPGLPGPPGPKGEAGVDGQVG 352
Query: 329 PDGCGGEGG--GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSL 379
P G G+ G GA G GP+ P E PG G NG++
Sbjct: 353 PPGQPGDKGERGAAGEQGPDGPKGSKGE------------PGKGEMVDYNGNI 393
Score = 38.1 bits (87), Expect = 0.014
Identities = 59/215 (27%), Positives = 68/215 (31%), Gaps = 45/215 (20%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDS----------APGPAPKRPRGGGAGG 210
PG ++G G+PG GE P AP P KR G
Sbjct: 148 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQS 207
Query: 211 SSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRPH 269
+ G G G G +G LG G GP PPG P PP P
Sbjct: 208 QASIQGPPGPPGPPGPSGP---------LGHPGLPGPMGPPGLPGPPGP----------- 247
Query: 270 PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTG 327
KG+ Y G + + + A GEPG PG G G
Sbjct: 248 -----KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEG 302
Query: 328 GPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
P G GE G AG G G EP P L G
Sbjct: 303 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 337
Score = 37.7 bits (86), Expect = 0.019
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 527 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 586
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
RG G G + TG G G+ G G D G+RG G+ GP G P
Sbjct: 587 ERGSKGDPGMTGPTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 639
Score = 32.7 bits (73), Expect = 0.60
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G +GE G GE D P P G G G G
Sbjct: 519 PGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGP---LGLPGASGLDGRPGPPGTPGP 575
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
GV G AG + G+RG G GP G P P G+
Sbjct: 576 IGVPGPAGPK--GERGSKGDPGMTGPTGAAGLPGLHGPPGD 614
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 281 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 340
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 341 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 399
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 400 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 458
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 459 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 494
Score = 49.7 bits (117), Expect = 5e-06
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGG-GAGGSSVGTGGG 218
PG D + G G PG GE + A PG P P+ P G G G G
Sbjct: 495 PGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEA 554
Query: 219 GTGGVGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
G G G G + + GDRG G G P P G P P P GE
Sbjct: 555 GLDGAKGEKGFQGEKGDRGPL---GLPGTPGPIGVPGPAGPKGE 595
Score = 48.9 bits (115), Expect = 8e-06
Identities = 61/197 (30%), Positives = 73/197 (37%), Gaps = 22/197 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVGTGGGG 219
PG+ G G PG DGE D P P P+ P G G G G G
Sbjct: 453 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 511
Query: 220 TGGVGGGAGSEDSGDRGGTLGG--GTLGPPSPPGAPSPPEPGGEIEL--VFRPHPLLVEK 275
+ G G G ++G G + G G GPP PPG P P GE L EK
Sbjct: 512 SPGEKGEKG--ETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEK 569
Query: 276 GEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDG 331
G+ T G V A + ++ G+PG GP G A G GP G
Sbjct: 570 GDRGPLGLPGTPGPIGVP--------GPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPG 621
Query: 332 CGGEGG--GAGGGDGPE 346
G G G G GP+
Sbjct: 622 DKGNRGERGKKGSRGPK 638
Score = 41.6 bits (96), Expect = 0.001
Identities = 57/188 (30%), Positives = 69/188 (36%), Gaps = 37/188 (19%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 411 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 469
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 470 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGET-- 522
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGGPDGCGGEGG-- 337
+ V L G PG PG G G DG GE G
Sbjct: 523 --GQAGSPVPGL--------------PGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQ 566
Query: 338 GAGGGDGP 345
G G GP
Sbjct: 567 GEKGDRGP 574
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 160 IPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGPA-PKRPRGG-GAGGSSV 213
+PG + G +GE G +G+ + P PGPA PK RG G G +
Sbjct: 547 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTG 606
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
TG G G+ G G D G+RG G+ GP G P
Sbjct: 607 PTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 647
Score = 40.8 bits (94), Expect = 0.002
Identities = 63/234 (26%), Positives = 77/234 (32%), Gaps = 63/234 (26%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 339 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 395
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 396 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 455
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G Q
Sbjct: 456 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPG--------------------PQG 493
Query: 312 EAGEPGGPG----GGASDTGGPDGCGGEGGGAG----GGDGPE-EPALPSLEGV 356
G+ G PG G + G G GE G AG G GPE P P L+GV
Sbjct: 494 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGV 547
Score = 36.6 bits (83), Expect = 0.042
Identities = 55/183 (30%), Positives = 69/183 (37%), Gaps = 26/183 (14%)
Query: 191 APDSAPG----PAPKRPRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRG-----GTLG 240
AP ++PG PA + P G G G G G G G AG G RG GT G
Sbjct: 110 APKTSPGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRG 169
Query: 241 ----GGTLGPPSPPGAPSPPEPGGEIELVFRPHP--LLVEKGEYCQTRYVKTTGNATVDH 294
G +G PG P P G +P P EKG+ + + + +
Sbjct: 170 FPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAAL 229
Query: 295 LSKYLALRIALERRQQQEA--GEPGGPGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPS 352
S + IAL+ Q Q + G PG PG GP G G G G P P P
Sbjct: 230 RSSQI---IALKGEQSQASIQGPPGPPG-----PPGPSGPLGHPGLPGPMGPPGLPGPPG 281
Query: 353 LEG 355
+G
Sbjct: 282 PKG 284
Score = 35.0 bits (79), Expect = 0.12
Identities = 65/251 (25%), Positives = 76/251 (30%), Gaps = 59/251 (23%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-------PAP----KRPRG 205
R +PG M G G PG+ G + P PG P P +P
Sbjct: 129 RPGLPGDKGAIGMPGRVGSPGDA---GLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGH 185
Query: 206 GGAGGSSVGTGGGGTGGVGGGAGSEDS--------------------------GDRGGTL 239
G G TG G G G G + G++
Sbjct: 186 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQAS 245
Query: 240 GGGTLGPPSPPG------APSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVD 293
G GPP PPG P P P G L P P KG+ Y G +
Sbjct: 246 IQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGP----KGDPGIQGYHGRKGERGMP 301
Query: 294 HLSKYLALRIALERRQQQEAGEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDG 344
+ + A GEPG PG G G P G GE G AG G G
Sbjct: 302 GMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGG 361
Query: 345 PEEPALPSLEG 355
EP P L G
Sbjct: 362 RGEPGPPGLPG 372
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 250 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 309
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 310 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 368
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 369 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 427
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 428 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 463
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 380 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 438
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 439 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 493
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 494 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 533
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 534 PKGEAGLDGAKG 545
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 308 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 364
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 365 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 424
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 425 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 474
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 475 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 521
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 498 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 550
Query: 231 -DSGDRG--GTLGGGTL-GPPSPPGAPSP---PEPGG 260
+ GDRG G G L G P PPG P P P P G
Sbjct: 551 GEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG 587
Score = 42.4 bits (98), Expect = 8e-04
Identities = 60/206 (29%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 422 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 480
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G ++ V P
Sbjct: 481 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG-LQGVPGPKGEAG 539
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
G + + G+ L L G PG PG G GP G
Sbjct: 540 LDGAKGEKGFQGEKGDRGPLGLPGASGL-----------DGRPGPPGTPGPIGVPGPAGP 588
Query: 333 GGEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 589 KGERGSKGDPGMTGPTGAAGLPGLHG 614
Score = 40.4 bits (93), Expect = 0.003
Identities = 65/240 (27%), Positives = 77/240 (32%), Gaps = 40/240 (16%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG----------PAP- 200
R + + PG + G G PG G+ S P PG P P
Sbjct: 106 RRREAPKTSPGCNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPI 165
Query: 201 ---KRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDS-------GDRGGTLGGGTLGPPSPP 250
+P G G TG G G G G + G++ G GPP PP
Sbjct: 166 GLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPP 225
Query: 251 G------APSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIA 304
G P P P G L P P KG+ Y G + + + A
Sbjct: 226 GPSGPLGHPGLPGPMGPPGLPGPPGP----KGDPGIQGYHGRKGERGMPGMPGKHGAKGA 281
Query: 305 LERRQQQEAGEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
GEPG PG G G P G GE G AG G G EP P L G
Sbjct: 282 PGIAVAGMKGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 341
Score = 37.7 bits (86), Expect = 0.019
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 531 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 590
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
RG G G + TG G G+ G G D G+RG G+ GP G P
Sbjct: 591 ERGSKGDPGMTGPTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 643
Score = 32.7 bits (73), Expect = 0.60
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G +GE G GE D P P G G G G
Sbjct: 523 PGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGP---LGLPGASGLDGRPGPPGTPGP 579
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
GV G AG + G+RG G GP G P P G+
Sbjct: 580 IGVPGPAGPK--GERGSKGDPGMTGPTGAAGLPGLHGPPGD 618
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 303 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 362
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 421
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 480
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 516
Score = 49.7 bits (117), Expect = 5e-06
Identities = 37/104 (35%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-PAPKRPRGG-GAGGSSVGTGGG 218
PG D + G G PG GE + A PG P P+ P G G G G
Sbjct: 517 PGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEA 576
Query: 219 GTGGVGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
G G G G + + GDRG G G P P G P P P GE
Sbjct: 577 GLDGAKGEKGFQGEKGDRGPL---GLPGTPGPIGVPGPAGPKGE 617
Score = 48.9 bits (115), Expect = 8e-06
Identities = 61/197 (30%), Positives = 73/197 (37%), Gaps = 22/197 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVGTGGGG 219
PG+ G G PG DGE D P P P+ P G G G G G
Sbjct: 475 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 533
Query: 220 TGGVGGGAGSEDSGDRGGTLGG--GTLGPPSPPGAPSPPEPGGEIEL--VFRPHPLLVEK 275
+ G G G ++G G + G G GPP PPG P P GE L EK
Sbjct: 534 SPGEKGEKG--ETGQAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEK 591
Query: 276 GEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDG 331
G+ T G V A + ++ G+PG GP G A G GP G
Sbjct: 592 GDRGPLGLPGTPGPIGVP--------GPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPG 643
Query: 332 CGGEGG--GAGGGDGPE 346
G G G G GP+
Sbjct: 644 DKGNRGERGKKGSRGPK 660
Score = 41.6 bits (96), Expect = 0.001
Identities = 57/188 (30%), Positives = 69/188 (36%), Gaps = 37/188 (19%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 433 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 491
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 492 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGET-- 544
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGGPDGCGGEGG-- 337
+ V L G PG PG G G DG GE G
Sbjct: 545 --GQAGSPVPGL--------------PGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQ 588
Query: 338 GAGGGDGP 345
G G GP
Sbjct: 589 GEKGDRGP 596
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 160 IPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGPA-PKRPRGG-GAGGSSV 213
+PG + G +GE G +G+ + P PGPA PK RG G G +
Sbjct: 569 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTG 628
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
TG G G+ G G D G+RG G+ GP G P
Sbjct: 629 PTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 669
Score = 40.8 bits (94), Expect = 0.002
Identities = 63/234 (26%), Positives = 77/234 (32%), Gaps = 63/234 (26%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 361 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 417
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 418 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 477
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G Q
Sbjct: 478 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPG--------------------PQG 515
Query: 312 EAGEPGGPG----GGASDTGGPDGCGGEGGGAG----GGDGPE-EPALPSLEGV 356
G+ G PG G + G G GE G AG G GPE P P L+GV
Sbjct: 516 PPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPVPGLPGPEGPPGPPGLQGV 569
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 48/233 (20%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGGGAGGSS 212
RR G ++ G G PG G + P PGP P G G
Sbjct: 256 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP----PGPKGDPGIQ 311
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G+ G G + G G G P PG G L LL
Sbjct: 312 GYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGL----PGLL 367
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGG 328
+KGE GN+ I R + G PG PG G G
Sbjct: 368 GQKGE------KGDAGNS------------IGGGRGEPGPPGLPGPPGPKGEAGVDGQVG 409
Query: 329 PDGCGGEGG--GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSL 379
P G G+ G GA G GP+ P E PG G NG++
Sbjct: 410 PPGQPGDKGERGAAGEQGPDGPKGSKGE------------PGKGEMVDYNGNI 450
Score = 33.9 bits (76), Expect = 0.27
Identities = 50/171 (29%), Positives = 56/171 (32%), Gaps = 35/171 (20%)
Query: 195 APGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAP 253
AP P KR G + G G G G +G LG G GP PPG P
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGP---------LGHPGLPGPMGPPGLP 299
Query: 254 SPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEA 313
PP P KG+ Y G + + + A
Sbjct: 300 GPPGP----------------KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMK 343
Query: 314 GEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
GEPG PG G G P G GE G AG G G EP P L G
Sbjct: 344 GEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 394
Score = 31.6 bits (70), Expect = 1.3
Identities = 52/217 (23%), Positives = 68/217 (31%), Gaps = 29/217 (13%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGS 211
R + + PG + G G PG + D PG G AG S
Sbjct: 106 RRREAPKTSPGCNCPPAFQGPTGRPG--------LPGDKGAIGMPGRVGSP---GDAGLS 154
Query: 212 SVGTGGG----GTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEI-ELV 265
+G G GT G G G + G G G +G PPG P P GE +
Sbjct: 155 IIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Query: 266 FRPH-------PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGG 318
PH P + + + + + + E+ Q G PG
Sbjct: 215 EYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGP 274
Query: 319 PGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
PG GP G G G G P P P +G
Sbjct: 275 PG-----PPGPSGPLGHPGLPGPMGPPGLPGPPGPKG 306
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 303 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 362
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 421
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 480
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 516
Score = 50.1 bits (118), Expect = 4e-06
Identities = 58/191 (30%), Positives = 72/191 (37%), Gaps = 42/191 (21%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 433 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 491
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 492 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 546
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG-------GASDTGGPDGCGGEG 336
+ G ++ EAGE G PG G G DG GE
Sbjct: 547 AGSPG--------------------EKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEK 586
Query: 337 G--GAGGGDGP 345
G G G GP
Sbjct: 587 GFQGEKGDRGP 597
Score = 43.5 bits (101), Expect = 3e-04
Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GAGGSSVGTGGG 218
PG D + G G PG GE + A +PG + G GA G G
Sbjct: 517 PGKDGPPGVKGENGHPGSPGEKGEKGETGQA--GSPGEKGEAGEKGNPGAEGLQGVPGPK 574
Query: 219 GTGGVGGGAGSE----DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
G G+ G G + + GDRG G G P P G P P P GE
Sbjct: 575 GEAGLDGAKGEKGFQGEKGDRGPL---GLPGTPGPIGVPGPAGPKGE 618
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 160 IPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGPA-PKRPRGG-GAGGSSV 213
+PG + G +GE G +G+ + P PGPA PK RG G G +
Sbjct: 570 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTG 629
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
TG G G+ G G D G+RG G+ GP G P
Sbjct: 630 PTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 670
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 48/233 (20%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGGGAGGSS 212
RR G ++ G G PG G + P PGP P G G
Sbjct: 256 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP----PGPKGDPGIQ 311
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G+ G G + G G G P PG G L LL
Sbjct: 312 GYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGL----PGLL 367
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGG 328
+KGE GN+ I R + G PG PG G G
Sbjct: 368 GQKGE------KGDAGNS------------IGGGRGEPGPPGLPGPPGPKGEAGVDGQVG 409
Query: 329 PDGCGGEGG--GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSL 379
P G G+ G GA G GP+ P E PG G NG++
Sbjct: 410 PPGQPGDKGERGAAGEQGPDGPKGSKGE------------PGKGEMVDYNGNI 450
Score = 39.3 bits (90), Expect = 0.006
Identities = 57/196 (29%), Positives = 66/196 (33%), Gaps = 19/196 (9%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVGTGGGG 219
PG+ G G PG DGE D P P P+ P G G G G G
Sbjct: 475 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 533
Query: 220 TGGVGGGAGSEDSGDRGGTLG-GGTLGPPSPPGAPSPPEPGGEIEL--VFRPHPLLVEKG 276
+ G G G G G G G P G P P GE L EKG
Sbjct: 534 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEKGFQGEKG 593
Query: 277 EYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPG--GPGGGASDTG--GPDGC 332
+ T G V A + ++ G+PG GP G A G GP G
Sbjct: 594 DRGPLGLPGTPGPIGVP--------GPAGPKGERGSKGDPGMTGPTGAAGLPGLHGPPGD 645
Query: 333 GGEGG--GAGGGDGPE 346
G G G G GP+
Sbjct: 646 KGNRGERGKKGSRGPK 661
Score = 33.9 bits (76), Expect = 0.27
Identities = 50/171 (29%), Positives = 56/171 (32%), Gaps = 35/171 (20%)
Query: 195 APGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAP 253
AP P KR G + G G G G +G LG G GP PPG P
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGP---------LGHPGLPGPMGPPGLP 299
Query: 254 SPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEA 313
PP P KG+ Y G + + + A
Sbjct: 300 GPPGP----------------KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMK 343
Query: 314 GEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
GEPG PG G G P G GE G AG G G EP P L G
Sbjct: 344 GEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 394
Score = 31.6 bits (70), Expect = 1.3
Identities = 52/217 (23%), Positives = 68/217 (31%), Gaps = 29/217 (13%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGS 211
R + + PG + G G PG + D PG G AG S
Sbjct: 106 RRREAPKTSPGCNCPPAFQGPTGRPG--------LPGDKGAIGMPGRVGSP---GDAGLS 154
Query: 212 SVGTGGG----GTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEI-ELV 265
+G G GT G G G + G G G +G PPG P P GE +
Sbjct: 155 IIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Query: 266 FRPH-------PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGG 318
PH P + + + + + + E+ Q G PG
Sbjct: 215 EYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGP 274
Query: 319 PGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
PG GP G G G G P P P +G
Sbjct: 275 PG-----PPGPSGPLGHPGLPGPMGPPGLPGPPGPKG 306
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 284 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 343
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 344 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 402
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 403 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 461
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 462 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 497
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 414 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 472
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 473 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 527
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 528 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 567
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 568 PKGEAGLDGAKG 579
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 342 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 398
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 399 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 458
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 459 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 508
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 509 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 555
Score = 44.3 bits (103), Expect = 2e-04
Identities = 32/92 (34%), Positives = 37/92 (40%), Gaps = 11/92 (11%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 532 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 584
Query: 231 -DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
+ GDRG G G P P G P P P GE
Sbjct: 585 GEKGDRGPL---GLPGTPGPIGVPGPAGPKGE 613
Score = 43.1 bits (100), Expect = 4e-04
Identities = 60/205 (29%), Positives = 66/205 (32%), Gaps = 34/205 (16%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 456 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 514
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G L P P
Sbjct: 515 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG---LQGVPGP--- 568
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCG 333
G A +D + E+ + G PG P G GP G
Sbjct: 569 -------------KGEAGLDGAKGEKGFQ--GEKGDRGPLGLPGTP--GPIGVPGPAGPK 611
Query: 334 GEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 612 GERGSKGDPGMTGPTGAAGLPGLHG 636
Score = 41.6 bits (96), Expect = 0.001
Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 160 IPGSDQTTTMSGGEGEPG----EGEGDGEDVSSDSAPDSAPGPA-PKRPRGG-GAGGSSV 213
+PG + G +GE G +G+ + P PGPA PK RG G G +
Sbjct: 565 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPIGVPGPAGPKGERGSKGDPGMTG 624
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
TG G G+ G G D G+RG G+ GP G P
Sbjct: 625 PTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 665
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 48/233 (20%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGGGAGGSS 212
RR G ++ G G PG G + P PGP P G G
Sbjct: 237 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP----PGPKGDPGIQ 292
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G+ G G + G G G P PG G L LL
Sbjct: 293 GYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGL----PGLL 348
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGG 328
+KGE GN+ I R + G PG PG G G
Sbjct: 349 GQKGE------KGDAGNS------------IGGGRGEPGPPGLPGPPGPKGEAGVDGQVG 390
Query: 329 PDGCGGEGG--GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSL 379
P G G+ G GA G GP+ P E PG G NG++
Sbjct: 391 PPGQPGDKGERGAAGEQGPDGPKGSKGE------------PGKGEMVDYNGNI 431
Score = 38.1 bits (87), Expect = 0.014
Identities = 59/215 (27%), Positives = 68/215 (31%), Gaps = 45/215 (20%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDS----------APGPAPKRPRGGGAGG 210
PG ++G G+PG GE P AP P KR G
Sbjct: 186 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQS 245
Query: 211 SSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRPH 269
+ G G G G +G LG G GP PPG P PP P
Sbjct: 246 QASIQGPPGPPGPPGPSGP---------LGHPGLPGPMGPPGLPGPPGP----------- 285
Query: 270 PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG--GGASDTG 327
KG+ Y G + + + A GEPG PG G G
Sbjct: 286 -----KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEG 340
Query: 328 GPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
P G GE G AG G G EP P L G
Sbjct: 341 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 375
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 262 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 321
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 322 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 380
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 381 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 439
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 440 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 475
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 392 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 450
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 451 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 505
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 506 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 545
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 546 PKGEAGLDGAKG 557
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 320 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 376
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 377 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 436
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 437 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 486
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 487 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 533
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 510 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 562
Query: 231 -DSGDRG--GTLGGGTL-GPPSPPGAPSP---PEPGG 260
+ GDRG G G L G P PPG P P P P G
Sbjct: 563 GEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG 599
Score = 42.4 bits (98), Expect = 8e-04
Identities = 65/232 (28%), Positives = 76/232 (32%), Gaps = 40/232 (17%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG-------PAP----KRPRG 205
R +PG M G G PG+ G + P PG P P +P
Sbjct: 129 RPGLPGDKGAIGMPGRVGSPGDA---GLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGH 185
Query: 206 GGAGGSSVGTGGGGTGGVGGGAGSEDS-------GDRGGTLGGGTLGPPSPPG------A 252
G G TG G G G G + G++ G GPP PPG
Sbjct: 186 PGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGH 245
Query: 253 PSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQE 312
P P P G L P P KG+ Y G + + + A
Sbjct: 246 PGLPGPMGPPGLPGPPGP----KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGM 301
Query: 313 AGEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
GEPG PG G G P G GE G AG G G EP P L G
Sbjct: 302 KGEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 353
Score = 42.4 bits (98), Expect = 8e-04
Identities = 60/206 (29%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 434 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 492
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G ++ V P
Sbjct: 493 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG-LQGVPGPKGEAG 551
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
G + + G+ L L G PG PG G GP G
Sbjct: 552 LDGAKGEKGFQGEKGDRGPLGLPGASGL-----------DGRPGPPGTPGPIGVPGPAGP 600
Query: 333 GGEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 601 KGERGSKGDPGMTGPTGAAGLPGLHG 626
Score = 37.7 bits (86), Expect = 0.019
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 543 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 602
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
RG G G + TG G G+ G G D G+RG G+ GP G P
Sbjct: 603 ERGSKGDPGMTGPTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 655
Score = 32.7 bits (73), Expect = 0.60
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G +GE G GE D P P G G G G
Sbjct: 535 PGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGP---LGLPGASGLDGRPGPPGTPGP 591
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
GV G AG + G+RG G GP G P P G+
Sbjct: 592 IGVPGPAGPK--GERGSKGDPGMTGPTGAAGLPGLHGPPGD 630
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 274 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 333
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 334 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 392
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 393 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 451
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 452 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 487
Score = 50.8 bits (120), Expect = 2e-06
Identities = 56/192 (29%), Positives = 72/192 (37%), Gaps = 33/192 (17%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 404 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 462
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 463 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 517
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGD 343
+ G ++ EAGE G PG GP+G G G G
Sbjct: 518 AGSPG--------------------EKGEAGEKGNPGAEVPGLPGPEGPPGPPGLQGVPG 557
Query: 344 GPEEPALPSLEG 355
E L +G
Sbjct: 558 PKGEAGLDGAKG 569
Score = 47.0 bits (110), Expect = 3e-05
Identities = 63/227 (27%), Positives = 76/227 (33%), Gaps = 45/227 (19%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGP--------------APKRPRGG 206
PG G +G+ G G G + P PGP P +P
Sbjct: 332 PGLPGLLGQKGEKGDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDK 388
Query: 207 GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG--------GTLGPP------SPPGA 252
G G++ G G G G G + D G + +GPP PPGA
Sbjct: 389 GERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGA 448
Query: 253 PSPPEPGGEIELVFRP-HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQ 311
P P GEI L P H EKG + + G ++
Sbjct: 449 PGIPGQKGEIGLPGPPGHD--GEKGPRGKPGDMGPPGPQGPPGKDGPPGVK--------G 498
Query: 312 EAGEPGGPG-GGASDTGGPDGCGGEGGGAG--GGDGPEEPALPSLEG 355
E G PG PG G G G GE G AG G G E P LP EG
Sbjct: 499 ENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEG 545
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/97 (36%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSE 230
G +GE GE G +V P+ PGP G G G G G G G +
Sbjct: 522 GEKGEAGEKGNPGAEVPGLPGPEGPPGPP-------GLQGVPGPKGEAGLDGAKGEKGFQ 574
Query: 231 -DSGDRG--GTLGGGTL-GPPSPPGAPSP---PEPGG 260
+ GDRG G G L G P PPG P P P P G
Sbjct: 575 GEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAG 611
Score = 42.4 bits (98), Expect = 8e-04
Identities = 60/206 (29%), Positives = 67/206 (32%), Gaps = 24/206 (11%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG-------GAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 446 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 504
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLV 273
G G G G AGS G G P PG PP P G ++ V P
Sbjct: 505 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGLPGPEGPPGPPG-LQGVPGPKGEAG 563
Query: 274 EKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPDGC 332
G + + G+ L L G PG PG G GP G
Sbjct: 564 LDGAKGEKGFQGEKGDRGPLGLPGASGL-----------DGRPGPPGTPGPIGVPGPAGP 612
Query: 333 GGEGGGAG--GGDGPEEPA-LPSLEG 355
GE G G G GP A LP L G
Sbjct: 613 KGERGSKGDPGMTGPTGAAGLPGLHG 638
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 48/233 (20%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGGGAGGSS 212
RR G ++ G G PG G + P PGP P G G
Sbjct: 227 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP----PGPKGDPGIQ 282
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G+ G G + G G G P PG G L LL
Sbjct: 283 GYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGL----PGLL 338
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGG 328
+KGE GN+ I R + G PG PG G G
Sbjct: 339 GQKGE------KGDAGNS------------IGGGRGEPGPPGLPGPPGPKGEAGVDGQVG 380
Query: 329 PDGCGGEGG--GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSL 379
P G G+ G GA G GP+ P E PG G NG++
Sbjct: 381 PPGQPGDKGERGAAGEQGPDGPKGSKGE------------PGKGEMVDYNGNI 421
Score = 37.7 bits (86), Expect = 0.019
Identities = 40/123 (32%), Positives = 50/123 (40%), Gaps = 21/123 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 555 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 614
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDS-GDRGGTLGGGTLGPPSPPGAP--SPPEP 258
RG G G + TG G G+ G G + + G+RG G G GAP P P
Sbjct: 615 ERGSKGDPGMTGPTGAAGLPGLHGPPGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCP 674
Query: 259 GGE 261
GE
Sbjct: 675 LGE 677
Score = 33.9 bits (76), Expect = 0.27
Identities = 50/171 (29%), Positives = 56/171 (32%), Gaps = 35/171 (20%)
Query: 195 APGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAP 253
AP P KR G + G G G G +G LG G GP PPG P
Sbjct: 220 APPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGP---------LGHPGLPGPMGPPGLP 270
Query: 254 SPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEA 313
PP P KG+ Y G + + + A
Sbjct: 271 GPPGP----------------KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMK 314
Query: 314 GEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
GEPG PG G G P G GE G AG G G EP P L G
Sbjct: 315 GEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 365
Score = 32.7 bits (73), Expect = 0.60
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PG + G +GE G GE D P P G G G G
Sbjct: 547 PGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGP---LGLPGASGLDGRPGPPGTPGP 603
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGE 261
GV G AG + G+RG G GP G P P G+
Sbjct: 604 IGVPGPAGPK--GERGSKGDPGMTGPTGAAGLPGLHGPPGD 642
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 56.2 bits (134), Expect = 5e-08
Identities = 63/216 (29%), Positives = 83/216 (38%), Gaps = 37/216 (17%)
Query: 171 GGEGEPG-------EGEGDGEDVSSDSAPDSAPGPAPKRPRGG-GAGGSSVGTGGGGTGG 222
G +G+PG +GE + APG A +G G G+ G G+ G
Sbjct: 303 GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 362
Query: 223 VGGGAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFR-------------- 267
+ G G + + GD G ++GGG G P PPG P PP P GE + +
Sbjct: 363 LPGLLGQKGEKGDAGNSIGGGR-GEPGPPGLPGPPGPKGEAGVDGQVGPPGQPGDKGERG 421
Query: 268 ------PHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P KGE + V GN + L + L + + G PG PG
Sbjct: 422 AAGEQGPDGPKGSKGEPGKGEMVDYNGNIN-EALQEIRTLALMGPPGLPGQIGPPGAPGI 480
Query: 321 -GGASDTG--GPDGCGGEGG--GAGGGDGPEEPALP 351
G + G GP G GE G G G GP P P
Sbjct: 481 PGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGP 516
Score = 50.8 bits (120), Expect = 2e-06
Identities = 64/215 (29%), Positives = 78/215 (36%), Gaps = 55/215 (25%)
Query: 171 GGEGEPGEGE-----GDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGG 225
G +GEPG+GE G+ + + + GP P P G G+ G G G+ G
Sbjct: 433 GSKGEPGKGEMVDYNGNINEALQEIRTLALMGP-PGLPGQIGPPGAPGIPGQKGEIGLPG 491
Query: 226 GAGSE-DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LLVEKGEYCQTRY 283
G + + G RG G GP PPG PP GE HP EKGE +T
Sbjct: 492 PPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE-----NGHPGSPGEKGEKGETGQ 546
Query: 284 VKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG-------GASDTGGPDGCGGEG 336
+ G ++ EAGE G PG G G DG GE
Sbjct: 547 AGSPG--------------------EKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEK 586
Query: 337 G--------------GAGGGDG-PEEPALPSLEGV 356
G GA G DG P P P GV
Sbjct: 587 GFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGV 621
Score = 39.3 bits (90), Expect = 0.006
Identities = 60/233 (25%), Positives = 72/233 (30%), Gaps = 48/233 (20%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGE----DVSSDSAPDSAPGPAPKRPRGGGAGGSS 212
RR G ++ G G PG G + P PGP P G G
Sbjct: 256 RRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGP----PGPKGDPGIQ 311
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G+ G G + G G G P PG G L LL
Sbjct: 312 GYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGL----PGLL 367
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG----GGASDTGG 328
+KGE GN+ I R + G PG PG G G
Sbjct: 368 GQKGE------KGDAGNS------------IGGGRGEPGPPGLPGPPGPKGEAGVDGQVG 409
Query: 329 PDGCGGEGG--GAGGGDGPEEPALPSLEGVSEKQYTIYIAPGGGAFTTLNGSL 379
P G G+ G GA G GP+ P E PG G NG++
Sbjct: 410 PPGQPGDKGERGAAGEQGPDGPKGSKGE------------PGKGEMVDYNGNI 450
Score = 39.3 bits (90), Expect = 0.006
Identities = 58/210 (27%), Positives = 68/210 (32%), Gaps = 46/210 (21%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRG-------GGAGGSSV 213
PG+ G G PG DGE D P P P+ P G G G
Sbjct: 475 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGP-PGPQGPPGKDGPPGVKGENGHPG 533
Query: 214 GTGGGGTGGVGGGAGSE----DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPH 269
G G G G AGS ++G++G G G P P G GE
Sbjct: 534 SPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEKGF----- 588
Query: 270 PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGG 328
+GE + G + +D G PG PG G G
Sbjct: 589 -----QGEKGDRGPLGLPGASGLD--------------------GRPGPPGTPGPIGVPG 623
Query: 329 PDGCGGEGGGAG--GGDGPEEPA-LPSLEG 355
P G GE G G G GP A LP L G
Sbjct: 624 PAGPKGERGSKGDPGMTGPTGAAGLPGLHG 653
Score = 37.7 bits (86), Expect = 0.019
Identities = 37/115 (32%), Positives = 46/115 (40%), Gaps = 20/115 (17%)
Query: 160 IPGSDQTTTMSGGEGEPG-EGE-GDGEDVSSDSA--------------PDSAPGPA-PKR 202
+PG + G +GE G +GE GD + A P PGPA PK
Sbjct: 570 VPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGVPGPAGPKG 629
Query: 203 PRGG-GAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP 256
RG G G + TG G G+ G G D G+RG G+ GP G P
Sbjct: 630 ERGSKGDPGMTGPTGAAGLPGLHGPPG--DKGNRGERGKKGSRGPKGDKGDQGAP 682
Score = 33.9 bits (76), Expect = 0.27
Identities = 50/171 (29%), Positives = 56/171 (32%), Gaps = 35/171 (20%)
Query: 195 APGPAPKRPRGGGAGGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAP 253
AP P KR G + G G G G +G LG G GP PPG P
Sbjct: 249 APPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGP---------LGHPGLPGPMGPPGLP 299
Query: 254 SPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEA 313
PP P KG+ Y G + + + A
Sbjct: 300 GPPGP----------------KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMK 343
Query: 314 GEPGGPG--GGASDTGGPD-----GCGGEGGGAGG--GDGPEEPALPSLEG 355
GEPG PG G G P G GE G AG G G EP P L G
Sbjct: 344 GEPGIPGTKGEKGAEGSPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPG 394
Score = 31.6 bits (70), Expect = 1.3
Identities = 52/217 (23%), Positives = 68/217 (31%), Gaps = 29/217 (13%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGS 211
R + + PG + G G PG + D PG G AG S
Sbjct: 106 RRREAPKTSPGCNCPPAFQGPTGRPG--------LPGDKGAIGMPGRVGSP---GDAGLS 154
Query: 212 SVGTGGG----GTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGEI-ELV 265
+G G GT G G G + G G G +G PPG P P GE +
Sbjct: 155 IIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCG 214
Query: 266 FRPH-------PLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGG 318
PH P + + + + + + E+ Q G PG
Sbjct: 215 EYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGP 274
Query: 319 PGGGASDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
PG GP G G G G P P P +G
Sbjct: 275 PG-----PPGPSGPLGHPGLPGPMGPPGLPGPPGPKG 306
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 55.8 bits (133), Expect = 7e-08
Identities = 62/212 (29%), Positives = 75/212 (35%), Gaps = 24/212 (11%)
Query: 162 GSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGP-------APKRPRGGGAGGSSV 213
G D G G PG G + D + + PGP P+ P G S
Sbjct: 324 GEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSP 383
Query: 214 GTGGGGTGGVGGGAGSEDS-GDRG-------GTLGG-GTLGPPSPPGAPSPPEPGGEIEL 264
G+ G G G G + S G+RG GT G G G P PG+P PP P G+I
Sbjct: 384 GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI-- 441
Query: 265 VFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGA 323
VFR P G++ Y+ + G VD L G PG PG G
Sbjct: 442 VFRKGP----PGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGV 497
Query: 324 SDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G G G G G P P G
Sbjct: 498 KGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPG 529
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/118 (35%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG----PAPKRPRGGG 207
R Q R+ + G T + G G GE GE D P PG P P P G
Sbjct: 559 RGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGPPGDPGSPGSPGPAGPAGPP 616
Query: 208 AGGSSVGTGGGGTGGVGGGAGSE-DSGDRG----GTLGGGTLGPPSPPGAPSPPEPGG 260
G G GT GV G G ++G RG T G GPP PPG P P P G
Sbjct: 617 GYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG 674
Score = 45.8 bits (107), Expect = 7e-05
Identities = 67/231 (29%), Positives = 80/231 (34%), Gaps = 56/231 (24%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGE-----DVSSDSAPDSAPG-PAPKRPRG--GGAG--- 209
PG T + G G PGE GE V P PG P P+ P G G G
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 210 --GSSVGTGGGGTGGVGGGAGSEDSGDRG-----GTLG-GGTLGPPSPPGAPSPPEPGGE 261
G G G G+G GD+G G+LG G +G P PG P P GE
Sbjct: 684 DPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGE 743
Query: 262 IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P + G + GN+ + E G PG PG
Sbjct: 744 --------PAVAMPGGPGTPGFPGERGNS-----------------GEHGEIGLPGLPGL 778
Query: 321 GGASDTGGPDGCGGEGG--GAGGGDGP-----EEP----ALPSLEGVSEKQ 360
G G DG G+ G G G GP E P LP L G+ +Q
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Score = 44.7 bits (104), Expect = 2e-04
Identities = 56/213 (26%), Positives = 65/213 (30%), Gaps = 64/213 (30%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--------GAGGSS 212
PG + G +GEPG EG + PG K+ G G G
Sbjct: 1041 PGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPE 1100
Query: 213 VGTGGGGTGGVGGGAGSE-DSGDRG--GTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRP 268
G G+ G+ G G D G +G G LG G GPP PG P P P G
Sbjct: 1101 GAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG-------- 1152
Query: 269 HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG- 327
R Q G P GP G +TG
Sbjct: 1153 -------------------------------------IRGDQGRDGIP-GPAGEKGETGL 1174
Query: 328 -----GPDGCGGEGGGAGGGDGPEEPALPSLEG 355
GP G G G G P P LP +G
Sbjct: 1175 LRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Score = 43.9 bits (102), Expect = 3e-04
Identities = 57/208 (27%), Positives = 72/208 (34%), Gaps = 15/208 (7%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAG--GSSVGTGGGGTGGVGGGAG 228
G G+PG DG + PGP + G G G G G+ G G AG
Sbjct: 557 GLRGQPGRKGLDG--IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAG 614
Query: 229 SEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTG 288
G +G GT G P PG P P GE+ + P+ G + G
Sbjct: 615 PPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSV---STPVPGPPGPPGPPGHPGPQG 671
Query: 289 NATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGP--- 345
+ +L + GEPG PG G GP G G G G P
Sbjct: 672 PPGIPG-----SLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKM 726
Query: 346 EEPALPSLEGVSEKQYTIYIAPGGGAFT 373
EP LP G+ + +A GG T
Sbjct: 727 GEPGLPGKPGLPGAKGEPAVAMPGGPGT 754
Score = 43.5 bits (101), Expect = 3e-04
Identities = 65/230 (28%), Positives = 77/230 (33%), Gaps = 63/230 (27%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA-----------PKRPRGG-GA 208
PG + G G PG + D D PGPA P PRG GA
Sbjct: 1133 PGIRGPPGLPGFPGSPGP-----MGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGA 1187
Query: 209 GGSSVGTGGGGTGGVGGGAGSE-DSGDRGGTLGGGTLGPPS------------------- 248
G+ G G G+ G G+ D+G RG T G GPP
Sbjct: 1188 QGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSR 1247
Query: 249 -PPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALER 307
PGAP PP P G H + + KG+ ++ H A +
Sbjct: 1248 GSPGAPGPPGPPGS-------HVIGI-KGD-----------KGSMGHPGPKGPPGTAGDM 1288
Query: 308 RQQQEAGEPGGPG--GGASDTG--GPDGCGGEGGGAG--GGDGPEEPALP 351
G PG PG G D G G G GE G G G GP P P
Sbjct: 1289 GPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGP 1338
Score = 40.0 bits (92), Expect = 0.004
Identities = 55/203 (27%), Positives = 62/203 (30%), Gaps = 52/203 (25%)
Query: 160 IPGSDQTTTMSGGEGEPGE----GEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVG 214
IPG G G PG G + S P PK P G G G
Sbjct: 1234 IPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Query: 215 TGGGGTGGVGGGAGSED-------SGDRGGTLGGGTLGPPSPPGAPSPPEPGGE------ 261
G GT G+ G G G++G G++GPP P G PP G+
Sbjct: 1294 LGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKI 1353
Query: 262 IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG 321
I L P P T G E Q E G PG PG
Sbjct: 1354 ISLPGSPGP-------------PGTPG-----------------EPGMQGEPGPPGPPGN 1383
Query: 322 ----GASDTGGPDGCGGEGGGAG 340
G G DG G G AG
Sbjct: 1384 LGPCGPRGKPGKDGKPGTPGPAG 1406
Score = 39.3 bits (90), Expect = 0.006
Identities = 59/223 (26%), Positives = 72/223 (32%), Gaps = 47/223 (21%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA--------------PKR 202
R+ PG G G PG GE + PGP P R
Sbjct: 444 RKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGR 503
Query: 203 PRGGGAGGSSVGTGGGGTGGVGGGAGSEDS----GDRGGTLGG-GTLGPPSPPGAPSPPE 257
G GS G G G G G++ G++G TL G +G P PG P
Sbjct: 504 QGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG 563
Query: 258 PGGEIELVFRP--HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGE 315
G + P L KGE L ++ E+ Q G+
Sbjct: 564 RKGLDGIPGTPGVKGLPGPKGE-----------------------LALSGEKGDQGPPGD 600
Query: 316 PGGPGG-GASDTGGPDGCG--GEGGGAGGGDGPEEPALPSLEG 355
PG PG G + GP G G GE G G P P P G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAG 643
Score = 39.3 bits (90), Expect = 0.006
Identities = 58/202 (28%), Positives = 72/202 (35%), Gaps = 29/202 (14%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PGS + +G G PG G + APGP + G G SV T G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGE---AGPRGELSVSTPVPGP 657
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP-EPGGEIELVFRPHPLLVEKGEYC 279
G G G G +G G+LG PG P P EPG I + P P G
Sbjct: 658 PGPPGPPG--HPGPQGPPGIPGSLGKCGDPGLPGPDGEPG--IPGIGFPGP----PGPKG 709
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG----GASDTGGP--DGCG 333
+ T G +L + + G+PG PG + GGP G
Sbjct: 710 DQGFPGTKG-----------SLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP 758
Query: 334 GEGGGAGGGDGPEEPALPSLEG 355
GE G +G P LP L G
Sbjct: 759 GERGNSGEHGEIGLPGLPGLPG 780
Score = 38.9 bits (89), Expect = 0.008
Identities = 62/252 (24%), Positives = 77/252 (30%), Gaps = 70/252 (27%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG----------GAG 209
+PG+ + G G+PG+ GE PG + PRG G
Sbjct: 778 LPGTPGNEGLDGPRGDPGQPGPPGE--------QGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 210 GSSVGTGGGGTGGVGGGAGSEDSGDRG-----------GTLG------------------ 240
G TG G G+ G S G+ G G LG
Sbjct: 830 GRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDG 889
Query: 241 -------GGTLGPPSPPGAPSPPEPGGE--IELVFRPHPLLVEKGEYCQTRYVKTTGNAT 291
G +GPP PPG P P G I V KGE GN
Sbjct: 890 VIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQ------GDKGNPG 943
Query: 292 VDHLSKYLALR-------IALERRQQQEAGEPGGPG-GGASDTGGPDGCGGEGGGAGGGD 343
+S + + A ++ G PG PG G GP G G G G
Sbjct: 944 PSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTG 1003
Query: 344 GPEEPALPSLEG 355
P EP L + G
Sbjct: 1004 NPGEPGLRGIPG 1015
Score = 37.7 bits (86), Expect = 0.019
Identities = 54/209 (25%), Positives = 61/209 (29%), Gaps = 52/209 (24%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA--------PKRPRGGGAGGSS 212
PG + G +G P + E D D APGP P G G
Sbjct: 144 PGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFF 203
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G G G G +G G GPP PPG
Sbjct: 204 GFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPG--------------------- 242
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGG---ASDTGGP 329
T V TG L E+ + GEPG PG G
Sbjct: 243 --------TVIVTLTGPDNRTDLKG--------EKGDKGAMGEPGPPGPSGLPGESYGSE 286
Query: 330 DGCGGEGG--GAGGGDGPEEPALPSLEGV 356
G G+ G G G DG P P EGV
Sbjct: 287 KGAPGDPGLQGKPGKDG--VPGFPGSEGV 313
Score = 37.7 bits (86), Expect = 0.019
Identities = 58/216 (26%), Positives = 69/216 (31%), Gaps = 56/216 (25%)
Query: 160 IPGSDQTTTMSGGEGE---------PGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GA 208
+ G D T + G +G+ PG GE S+ PG K + G G
Sbjct: 248 LTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGF 307
Query: 209 GGSSVGTGGGGTGGVGGGAGSEDS-------GDRGGTL---------GGGTLGPPSPPGA 252
GS G G G+ G G + G RG T GT GPP P GA
Sbjct: 308 PGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGA 367
Query: 253 PSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE-RRQQQ 311
P P G + P S LR A +
Sbjct: 368 RGPQGPSGPPGVPGSPG--------------------------SSRPGLRGAPGWPGLKG 401
Query: 312 EAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGP 345
GE G PG A T G GC G G G+ G GP
Sbjct: 402 SKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGP 437
Score = 36.2 bits (82), Expect = 0.055
Identities = 60/211 (28%), Positives = 66/211 (31%), Gaps = 41/211 (19%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
+PG+ T G G PG GE PG G G + G
Sbjct: 107 LPGTPGNTGPYGLVGVPGCSGSKGEQ--------GFPGLP------GTLGYPGIPGAAGL 152
Query: 220 TGGVGGGAGSED-----SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVE 274
G G A ED GD G G G P PPG P P P G P
Sbjct: 153 KGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPG-------PPGFFGF 205
Query: 275 KGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDG--- 331
G G + H ER + G PG PG GPD
Sbjct: 206 PGAMGPRGPKGHMGERVIGHKG---------ERGVKGLTGPPGPPGTVIVTLTGPDNRTD 256
Query: 332 CGGEGG--GAGGGDGPEEPA-LPSLEGVSEK 359
GE G GA G GP P+ LP SEK
Sbjct: 257 LKGEKGDKGAMGEPGPPGPSGLPGESYGSEK 287
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 39/149 (26%)
Query: 161 PGSDQTTTMSGGEGEPG-EG-EGDGEDVSSDSAPD--------SAPGPA-PKRPRGG-GA 208
PG + + + G +GEPG +G G+ + + P PGPA P PRG G+
Sbjct: 942 PGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGS 1001
Query: 209 GGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG---------------------------G 241
G+ G G G G G S + GTLG G
Sbjct: 1002 TGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEG 1061
Query: 242 GTLGPPSPPGAPSPPEPGGEIELVFRPHP 270
GPP P G P P G+ + +P P
Sbjct: 1062 TRPGPPGPTGDPGLPGDMGKKGEMGQPGP 1090
Score = 34.3 bits (77), Expect = 0.21
Identities = 36/116 (31%), Positives = 41/116 (35%), Gaps = 19/116 (16%)
Query: 162 GSDQTTTMSGGEGEPG-------EGEGDGEDVSSDSAPDSAPGP-APKRPRG--GGAGGS 211
G+ T + G G+PG +GE P PGP PK P G G G
Sbjct: 1295 GAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGP---PGPIGPKGPPGVRGDPGTL 1351
Query: 212 SV-----GTGGGGTGGVGGGAGSEDSGDRGGTLGG-GTLGPPSPPGAPSPPEPGGE 261
+ G GT G G G G LG G G P G P P P GE
Sbjct: 1352 KIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGTPGPAGE 1407
Score = 31.6 bits (70), Expect = 1.3
Identities = 52/205 (25%), Positives = 61/205 (29%), Gaps = 25/205 (12%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA-------PKRPRGGGAGGSSV 213
PG+ G GE G V + P PG R G G
Sbjct: 206 PGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKG 265
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LL 272
G G G G G ++G G G P G P PG E R P L+
Sbjct: 266 AMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPG--FPGSEGVKGNRGFPGLM 323
Query: 273 VEKGEYCQTRYVKTTG-NATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPD 330
E G Q + G ++ Y QE G+ G PG G GP
Sbjct: 324 GEDGIKGQKGDIGPPGFRGPTEYYDTY------------QEKGDEGTPGPPGPRGARGPQ 371
Query: 331 GCGGEGGGAGGGDGPEEPALPSLEG 355
G G G G G P L G
Sbjct: 372 GPSGP-PGVPGSPGSSRPGLRGAPG 395
Score = 31.2 bits (69), Expect = 1.8
Identities = 29/105 (27%), Positives = 33/105 (31%), Gaps = 4/105 (3%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGG 217
R PG G G+ G G + P PG P G G G
Sbjct: 1194 RGAPGFPGLPGRKGAMGDAGPRGPTG--IEGFPGPPGLPGAII--PGQTGNRGPPGSRGS 1249
Query: 218 GGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEI 262
G G G GS G +G G GP PPG P G +
Sbjct: 1250 PGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRL 1294
Score = 29.3 bits (64), Expect = 6.7
Identities = 54/194 (27%), Positives = 66/194 (34%), Gaps = 38/194 (19%)
Query: 171 GGEGEPGEGEGDGEDVSSD----SAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGG 226
G +GE GE G S + P+ PGP G G G+ G
Sbjct: 43 GAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQ----------------GPKGFPGLPGL 86
Query: 227 AGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKT 286
GS+ G RG + G G P PG P P G LV P KGE T
Sbjct: 87 TGSK--GVRGISGLPGFSGSPGLPGTPGNTGPYG---LVGVP-GCSGSKGEQGFPGLPGT 140
Query: 287 TGNATVDHLSKYLALRIALERRQQQE---AGEPGGPGG-GASDTGGPDGCGGEGGGAG-- 340
G + + + A + + E G+PG PG G GP G G G G
Sbjct: 141 LGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPP 200
Query: 341 ------GGDGPEEP 348
G GP P
Sbjct: 201 GFFGFPGAMGPRGP 214
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 55.8 bits (133), Expect = 7e-08
Identities = 62/212 (29%), Positives = 75/212 (35%), Gaps = 24/212 (11%)
Query: 162 GSDQTTTMSGGEGEPG-EGEGDGEDVSSDSAPDSAPGP-------APKRPRGGGAGGSSV 213
G D G G PG G + D + + PGP P+ P G S
Sbjct: 324 GEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGARGPQGPSGPPGVPGSP 383
Query: 214 GTGGGGTGGVGGGAGSEDS-GDRG-------GTLGG-GTLGPPSPPGAPSPPEPGGEIEL 264
G+ G G G G + S G+RG GT G G G P PG+P PP P G+I
Sbjct: 384 GSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGPPGDI-- 441
Query: 265 VFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGA 323
VFR P G++ Y+ + G VD L G PG PG G
Sbjct: 442 VFRKGP----PGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGV 497
Query: 324 SDTGGPDGCGGEGGGAGGGDGPEEPALPSLEG 355
G G G G G P P G
Sbjct: 498 KGIPGRQGAAGLKGSPGSPGNTGLPGFPGFPG 529
Score = 50.8 bits (120), Expect = 2e-06
Identities = 42/118 (35%), Positives = 47/118 (39%), Gaps = 11/118 (9%)
Query: 152 RAQRVRRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPG----PAPKRPRGGG 207
R Q R+ + G T + G G GE GE D P PG P P P G
Sbjct: 559 RGQPGRKGLDGIPGTPGVKGLPGPKGELALSGE--KGDQGPPGDPGSPGSPGPAGPAGPP 616
Query: 208 AGGSSVGTGGGGTGGVGGGAGSE-DSGDRG----GTLGGGTLGPPSPPGAPSPPEPGG 260
G G GT GV G G ++G RG T G GPP PPG P P P G
Sbjct: 617 GYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPG 674
Score = 45.8 bits (107), Expect = 7e-05
Identities = 67/231 (29%), Positives = 80/231 (34%), Gaps = 56/231 (24%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGE-----DVSSDSAPDSAPG-PAPKRPRG--GGAG--- 209
PG T + G G PGE GE V P PG P P+ P G G G
Sbjct: 624 PGLQGTQGVPGAPGPPGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 210 --GSSVGTGGGGTGGVGGGAGSEDSGDRG-----GTLG-GGTLGPPSPPGAPSPPEPGGE 261
G G G G+G GD+G G+LG G +G P PG P P GE
Sbjct: 684 DPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKMGEPGLPGKPGLPGAKGE 743
Query: 262 IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPG- 320
P + G + GN+ + E G PG PG
Sbjct: 744 --------PAVAMPGGPGTPGFPGERGNS-----------------GEHGEIGLPGLPGL 778
Query: 321 GGASDTGGPDGCGGEGG--GAGGGDGP-----EEP----ALPSLEGVSEKQ 360
G G DG G+ G G G GP E P LP L G+ +Q
Sbjct: 779 PGTPGNEGLDGPRGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Score = 44.7 bits (104), Expect = 2e-04
Identities = 56/213 (26%), Positives = 65/213 (30%), Gaps = 64/213 (30%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--------GAGGSS 212
PG + G +GEPG EG + PG K+ G G G
Sbjct: 1041 PGLPGIHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPGHLGPAGPE 1100
Query: 213 VGTGGGGTGGVGGGAGSE-DSGDRG--GTLGG-GTLGPPSPPGAPSPPEPGGEIELVFRP 268
G G+ G+ G G D G +G G LG G GPP PG P P P G
Sbjct: 1101 GAPGSPGSPGLPGKPGPHGDLGFKGIKGLLGPPGIRGPPGLPGFPGSPGPMG-------- 1152
Query: 269 HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTG- 327
R Q G P GP G +TG
Sbjct: 1153 -------------------------------------IRGDQGRDGIP-GPAGEKGETGL 1174
Query: 328 -----GPDGCGGEGGGAGGGDGPEEPALPSLEG 355
GP G G G G P P LP +G
Sbjct: 1175 LRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKG 1207
Score = 43.9 bits (102), Expect = 3e-04
Identities = 57/208 (27%), Positives = 72/208 (34%), Gaps = 15/208 (7%)
Query: 171 GGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAG--GSSVGTGGGGTGGVGGGAG 228
G G+PG DG + PGP + G G G G G+ G G AG
Sbjct: 557 GLRGQPGRKGLDG--IPGTPGVKGLPGPKGELALSGEKGDQGPPGDPGSPGSPGPAGPAG 614
Query: 229 SEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTG 288
G +G GT G P PG P P GE+ + P+ G + G
Sbjct: 615 PPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGELSV---STPVPGPPGPPGPPGHPGPQG 671
Query: 289 NATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDGCGGEGGGAGGGDGP--- 345
+ +L + GEPG PG G GP G G G G P
Sbjct: 672 PPGIPG-----SLGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSLGCPGKM 726
Query: 346 EEPALPSLEGVSEKQYTIYIAPGGGAFT 373
EP LP G+ + +A GG T
Sbjct: 727 GEPGLPGKPGLPGAKGEPAVAMPGGPGT 754
Score = 43.5 bits (101), Expect = 3e-04
Identities = 65/230 (28%), Positives = 77/230 (33%), Gaps = 63/230 (27%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA-----------PKRPRGG-GA 208
PG + G G PG + D D PGPA P PRG GA
Sbjct: 1133 PGIRGPPGLPGFPGSPGP-----MGIRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGA 1187
Query: 209 GGSSVGTGGGGTGGVGGGAGSE-DSGDRGGTLGGGTLGPPS------------------- 248
G+ G G G+ G G+ D+G RG T G GPP
Sbjct: 1188 QGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPPGLPGAIIPGQTGNRGPPGSR 1247
Query: 249 -PPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALER 307
PGAP PP P G H + + KG+ ++ H A +
Sbjct: 1248 GSPGAPGPPGPPGS-------HVIGI-KGD-----------KGSMGHPGPKGPPGTAGDM 1288
Query: 308 RQQQEAGEPGGPG--GGASDTG--GPDGCGGEGGGAG--GGDGPEEPALP 351
G PG PG G D G G G GE G G G GP P P
Sbjct: 1289 GPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGP 1338
Score = 43.5 bits (101), Expect = 3e-04
Identities = 63/227 (27%), Positives = 71/227 (31%), Gaps = 61/227 (26%)
Query: 160 IPGSDQTTTMSGGEGEPGE----GEGDGEDVSSDSAPDSAPGPAPKRPRG-GGAGGSSVG 214
IPG G G PG G + S P PK P G G G
Sbjct: 1234 IPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGR 1293
Query: 215 TGGGGTGGVGGGAGSED-------SGDRGGTLGGGTLGPPSPPGAPSPPEPGGE------ 261
G GT G+ G G G++G G++GPP P G PP G+
Sbjct: 1294 LGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTLKI 1353
Query: 262 IELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG 321
I L P P T G E Q E G PG PG
Sbjct: 1354 ISLPGSPGP-------------PGTPG-----------------EPGMQGEPGPPGPPGN 1383
Query: 322 ----GASDTGGPDGCGGEGGGAG-----GGDGPEEPA----LPSLEG 355
G G DG G G AG G G PA LP L+G
Sbjct: 1384 LGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGLPGLKG 1430
Score = 39.3 bits (90), Expect = 0.006
Identities = 59/223 (26%), Positives = 72/223 (32%), Gaps = 47/223 (21%)
Query: 157 RRPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA--------------PKR 202
R+ PG G G PG GE + PGP P R
Sbjct: 444 RKGPPGDHGLPGYLGSPGIPGVDGPKGEPGLLCTQCPYIPGPPGLPGLPGLHGVKGIPGR 503
Query: 203 PRGGGAGGSSVGTGGGGTGGVGGGAGSEDS----GDRGGTLGG-GTLGPPSPPGAPSPPE 257
G GS G G G G G++ G++G TL G +G P PG P
Sbjct: 504 QGAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETLQPEGQVGVPGDPGLRGQPG 563
Query: 258 PGGEIELVFRP--HPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGE 315
G + P L KGE L ++ E+ Q G+
Sbjct: 564 RKGLDGIPGTPGVKGLPGPKGE-----------------------LALSGEKGDQGPPGD 600
Query: 316 PGGPGG-GASDTGGPDGCG--GEGGGAGGGDGPEEPALPSLEG 355
PG PG G + GP G G GE G G P P P G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGEAG 643
Score = 39.3 bits (90), Expect = 0.006
Identities = 58/202 (28%), Positives = 72/202 (35%), Gaps = 29/202 (14%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGGT 220
PGS + +G G PG G + APGP + G G SV T G
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQGEPGLQGTQGVPGAPGPPGE---AGPRGELSVSTPVPGP 657
Query: 221 GGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPP-EPGGEIELVFRPHPLLVEKGEYC 279
G G G G +G G+LG PG P P EPG I + P P G
Sbjct: 658 PGPPGPPG--HPGPQGPPGIPGSLGKCGDPGLPGPDGEPG--IPGIGFPGP----PGPKG 709
Query: 280 QTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGG----GASDTGGP--DGCG 333
+ T G +L + + G+PG PG + GGP G
Sbjct: 710 DQGFPGTKG-----------SLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFP 758
Query: 334 GEGGGAGGGDGPEEPALPSLEG 355
GE G +G P LP L G
Sbjct: 759 GERGNSGEHGEIGLPGLPGLPG 780
Score = 38.9 bits (89), Expect = 0.008
Identities = 62/252 (24%), Positives = 77/252 (30%), Gaps = 70/252 (27%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG----------GAG 209
+PG+ + G G+PG+ GE PG + PRG G
Sbjct: 778 LPGTPGNEGLDGPRGDPGQPGPPGE--------QGPPGRCIEGPRGAQGLPGLNGLKGQQ 829
Query: 210 GSSVGTGGGGTGGVGGGAGSEDSGDRG-----------GTLG------------------ 240
G TG G G+ G S G+ G G LG
Sbjct: 830 GRRGKTGPKGDPGIPGLDRSGFPGETGSPGIPGHQGEMGPLGQRGYPGNPGILGPPGEDG 889
Query: 241 -------GGTLGPPSPPGAPSPPEPGGE--IELVFRPHPLLVEKGEYCQTRYVKTTGNAT 291
G +GPP PPG P P G I V KGE GN
Sbjct: 890 VIGMMGFPGAIGPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGEQ------GDKGNPG 943
Query: 292 VDHLSKYLALR-------IALERRQQQEAGEPGGPG-GGASDTGGPDGCGGEGGGAGGGD 343
+S + + A ++ G PG PG G GP G G G G
Sbjct: 944 PSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGSTG 1003
Query: 344 GPEEPALPSLEG 355
P EP L + G
Sbjct: 1004 NPGEPGLRGIPG 1015
Score = 37.7 bits (86), Expect = 0.019
Identities = 54/209 (25%), Positives = 61/209 (29%), Gaps = 52/209 (24%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA--------PKRPRGGGAGGSS 212
PG + G +G P + E D D APGP P G G
Sbjct: 144 PGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPPGFF 203
Query: 213 VGTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLL 272
G G G G G G +G G GPP PPG
Sbjct: 204 GFPGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPG--------------------- 242
Query: 273 VEKGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGG---ASDTGGP 329
T V TG L E+ + GEPG PG G
Sbjct: 243 --------TVIVTLTGPDNRTDLKG--------EKGDKGAMGEPGPPGPSGLPGESYGSE 286
Query: 330 DGCGGEGG--GAGGGDGPEEPALPSLEGV 356
G G+ G G G DG P P EGV
Sbjct: 287 KGAPGDPGLQGKPGKDG--VPGFPGSEGV 313
Score = 37.7 bits (86), Expect = 0.019
Identities = 58/216 (26%), Positives = 69/216 (31%), Gaps = 56/216 (25%)
Query: 160 IPGSDQTTTMSGGEGE---------PGEGEGDGEDVSSDSAPDSAPGPAPKRPRGG--GA 208
+ G D T + G +G+ PG GE S+ PG K + G G
Sbjct: 248 LTGPDNRTDLKGEKGDKGAMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPGF 307
Query: 209 GGSSVGTGGGGTGGVGGGAGSEDS-------GDRGGTL---------GGGTLGPPSPPGA 252
GS G G G+ G G + G RG T GT GPP P GA
Sbjct: 308 PGSEGVKGNRGFPGLMGEDGIKGQKGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPGPRGA 367
Query: 253 PSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKTTGNATVDHLSKYLALRIALE-RRQQQ 311
P P G + P S LR A +
Sbjct: 368 RGPQGPSGPPGVPGSPG--------------------------SSRPGLRGAPGWPGLKG 401
Query: 312 EAGEPGGPGGGASDTGGPDGCGGEGG--GAGGGDGP 345
GE G PG A T G GC G G G+ G GP
Sbjct: 402 SKGERGRPGKDAMGTPGSPGCAGSPGLPGSPGPPGP 437
Score = 36.2 bits (82), Expect = 0.055
Identities = 60/211 (28%), Positives = 66/211 (31%), Gaps = 41/211 (19%)
Query: 160 IPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGGGG 219
+PG+ T G G PG GE PG G G + G
Sbjct: 107 LPGTPGNTGPYGLVGVPGCSGSKGEQ--------GFPGLP------GTLGYPGIPGAAGL 152
Query: 220 TGGVGGGAGSED-----SGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVE 274
G G A ED GD G G G P PPG P P P G P
Sbjct: 153 KGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPG-------PPGFFGF 205
Query: 275 KGEYCQTRYVKTTGNATVDHLSKYLALRIALERRQQQEAGEPGGPGGGASDTGGPDG--- 331
G G + H ER + G PG PG GPD
Sbjct: 206 PGAMGPRGPKGHMGERVIGHKG---------ERGVKGLTGPPGPPGTVIVTLTGPDNRTD 256
Query: 332 CGGEGG--GAGGGDGPEEPA-LPSLEGVSEK 359
GE G GA G GP P+ LP SEK
Sbjct: 257 LKGEKGDKGAMGEPGPPGPSGLPGESYGSEK 287
Score = 34.7 bits (78), Expect = 0.16
Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 39/149 (26%)
Query: 161 PGSDQTTTMSGGEGEPG-EG-EGDGEDVSSDSAPD--------SAPGPA-PKRPRGG-GA 208
PG + + + G +GEPG +G G+ + + P PGPA P PRG G+
Sbjct: 942 PGPSEISHVIGDKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGLPGPAGPPGPRGDLGS 1001
Query: 209 GGSSVGTGGGGTGGVGGGAGSEDSGDRGGTLG---------------------------G 241
G+ G G G G G S + GTLG G
Sbjct: 1002 TGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGIHGLQGDKGEPGYSEG 1061
Query: 242 GTLGPPSPPGAPSPPEPGGEIELVFRPHP 270
GPP P G P P G+ + +P P
Sbjct: 1062 TRPGPPGPTGDPGLPGDMGKKGEMGQPGP 1090
Score = 31.6 bits (70), Expect = 1.3
Identities = 52/205 (25%), Positives = 61/205 (29%), Gaps = 25/205 (12%)
Query: 161 PGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPA-------PKRPRGGGAGGSSV 213
PG+ G GE G V + P PG R G G
Sbjct: 206 PGAMGPRGPKGHMGERVIGHKGERGVKGLTGPPGPPGTVIVTLTGPDNRTDLKGEKGDKG 265
Query: 214 GTGGGGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHP-LL 272
G G G G G ++G G G P G P PG E R P L+
Sbjct: 266 AMGEPGPPGPSGLPGESYGSEKGAPGDPGLQGKPGKDGVPG--FPGSEGVKGNRGFPGLM 323
Query: 273 VEKGEYCQTRYVKTTG-NATVDHLSKYLALRIALERRQQQEAGEPGGPG-GGASDTGGPD 330
E G Q + G ++ Y QE G+ G PG G GP
Sbjct: 324 GEDGIKGQKGDIGPPGFRGPTEYYDTY------------QEKGDEGTPGPPGPRGARGPQ 371
Query: 331 GCGGEGGGAGGGDGPEEPALPSLEG 355
G G G G G P L G
Sbjct: 372 GPSGP-PGVPGSPGSSRPGLRGAPG 395
Score = 31.2 bits (69), Expect = 1.8
Identities = 29/105 (27%), Positives = 33/105 (31%), Gaps = 4/105 (3%)
Query: 158 RPIPGSDQTTTMSGGEGEPGEGEGDGEDVSSDSAPDSAPGPAPKRPRGGGAGGSSVGTGG 217
R PG G G+ G G + P PG P G G G
Sbjct: 1194 RGAPGFPGLPGRKGAMGDAGPRGPTG--IEGFPGPPGLPGAII--PGQTGNRGPPGSRGS 1249
Query: 218 GGTGGVGGGAGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEI 262
G G G GS G +G G GP PPG P G +
Sbjct: 1250 PGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRL 1294
Score = 29.3 bits (64), Expect = 6.7
Identities = 54/194 (27%), Positives = 66/194 (34%), Gaps = 38/194 (19%)
Query: 171 GGEGEPGEGEGDGEDVSSD----SAPDSAPGPAPKRPRGGGAGGSSVGTGGGGTGGVGGG 226
G +GE GE G S + P+ PGP G G G+ G
Sbjct: 43 GAKGEKGEKGFPGPPGSPGQKGFTGPEGLPGPQ----------------GPKGFPGLPGL 86
Query: 227 AGSEDSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPLLVEKGEYCQTRYVKT 286
GS+ G RG + G G P PG P P G LV P KGE T
Sbjct: 87 TGSK--GVRGISGLPGFSGSPGLPGTPGNTGPYG---LVGVP-GCSGSKGEQGFPGLPGT 140
Query: 287 TGNATVDHLSKYLALRIALERRQQQE---AGEPGGPGG-GASDTGGPDGCGGEGGGAG-- 340
G + + + A + + E G+PG PG G GP G G G G
Sbjct: 141 LGYPGIPGAAGLKGQKGAPAKEEDIELDAKGDPGLPGAPGPQGLPGPPGFPGPVGPPGPP 200
Query: 341 ------GGDGPEEP 348
G GP P
Sbjct: 201 GFFGFPGAMGPRGP 214
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.134 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,242,188
Number of Sequences: 37866
Number of extensions: 1578292
Number of successful extensions: 41204
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 1036
Number of HSP's that attempted gapping in prelim test: 12595
Number of HSP's gapped (non-prelim): 14550
length of query: 406
length of database: 18,247,518
effective HSP length: 105
effective length of query: 301
effective length of database: 14,271,588
effective search space: 4295747988
effective search space used: 4295747988
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.