Guide to the Human Genome
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Name: RNF2 Sequence: fasta or formatted (336aa) NCBI GI: 6005747
Description:

ring finger protein 2

Referenced in:

Ring Finger Proteins
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         24           2
 C cysteine            2.4          8           1
 D aspartate           5.1         17           2
 E glutamate           8.0         27           2
 F phenylalanine       1.5          5           1
 G glycine             4.5         15           1
 H histidine           3.0         10           1
 I isoleucine          4.8         16           2
 K lysine              7.1         24           2
 L leucine             9.5         32           1
 M methionine          3.0         10           1
 N asparagine          6.2         21           3
 P proline             4.2         14           1
 Q glutamine           5.1         17           2
 R arginine            5.1         17           1
 S serine              9.8         33           2
 T threonine           6.5         22           2
 V valine              3.6         12           2
 W tryptophan          0.6          2           1
 Y tyrosine            3.0         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 2 
RING1                 0.551   ring finger protein 1 
PCGF3                 0.049   ring finger protein 3 
BRCA1                 0.045   breast cancer 1, early onset isoform 2 
BRCA1                 0.045   breast cancer 1, early onset isoform 5 
BRCA1                 0.045   breast cancer 1, early onset isoform 4 
BRCA1                 0.045   breast cancer 1, early onset isoform 1 
RNF138                0.045   ring finger protein 138 isoform 1 
PCGF2                 0.040   ring finger protein 110 
PCGF5                 0.038   polycomb group ring finger 5 
PCGF1                 0.038   polycomb group ring finger 1 
TRIM21                0.038   tripartite motif protein 21 
TRIM26                0.035   tripartite motif-containing 26 
BMI1                  0.035   BMI1 polycomb ring finger oncogene 
RNF4                  0.034   ring finger protein 4 
TRIM31                0.034   tripartite motif protein 31 
RFWD2                 0.034   ring finger and WD repeat domain 2 isoform a 
DTX3                  0.034   deltex homolog 3 
LOC644006             0.032   PREDICTED: hypothetical LOC644006 
LOC100290804          0.032   PREDICTED: hypothetical protein XP_002347917 
LOC644006             0.032   PREDICTED: hypothetical protein LOC644006 
TRIM61                0.032   tripartite motif-containing 61 
TRAF6                 0.032   TNF receptor-associated factor 6 
TRAF6                 0.032   TNF receptor-associated factor 6 
UHRF2                 0.031   ubiquitin-like with PHD and ring finger domains 2 [H...
RNF125                0.031   ring finger protein 125 
CHFR                  0.029   checkpoint with forkhead and ring finger domains is...
CHFR                  0.029   checkpoint with forkhead and ring finger domains is...
CHFR                  0.029   checkpoint with forkhead and ring finger domains is...
CHFR                  0.029   checkpoint with forkhead and ring finger domains is...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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