Guide to the Human Genome
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Name: RING1 Sequence: fasta or formatted (406aa) NCBI GI: 51479192
Description:

ring finger protein 1

Referenced in:

Nonhistone Chromosomal Proteins
Ring Finger Proteins
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         27           1
 C cysteine            2.5         10           1
 D aspartate           4.4         18           1
 E glutamate           8.4         34           2
 F phenylalanine       1.2          5           1
 G glycine            15.5         63           4
 H histidine           2.0          8           1
 I isoleucine          3.2         13           1
 K lysine              4.2         17           2
 L leucine             8.4         34           2
 M methionine          2.0          8           1
 N asparagine          2.2          9           1
 P proline             8.9         36           2
 Q glutamine           3.2         13           3
 R arginine            6.2         25           2
 S serine              8.1         33           3
 T threonine           6.7         27           3
 V valine              3.7         15           1
 W tryptophan          0.5          2           1
 Y tyrosine            2.2          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 1 
RNF2                  0.440   ring finger protein 2 
COL2A1                0.045   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.045   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL3A1                0.045   collagen type III alpha 1 preproprotein 
ZNF503                0.043   zinc finger protein 503 
COL14A1               0.040   collagen, type XIV, alpha 1 
COL11A2               0.040   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.040   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.040   collagen, type XI, alpha 2 isoform 1 preproprotein ...
CACNG8                0.040   voltage-dependent calcium channel gamma-8 subunit [H...
COL15A1               0.039   alpha 1 type XV collagen precursor 
LOC100293055          0.039   PREDICTED: similar to COL22A1 protein 
COL22A1               0.039   collagen, type XXII, alpha 1 
COL1A1                0.039   alpha 1 type I collagen preproprotein 
COL13A1               0.038   alpha 1 type XIII collagen isoform 20 
COL13A1               0.038   alpha 1 type XIII collagen isoform 19 
COL13A1               0.038   alpha 1 type XIII collagen isoform 18 
COL13A1               0.038   alpha 1 type XIII collagen isoform 17 
COL13A1               0.038   alpha 1 type XIII collagen isoform 16 
COL13A1               0.038   alpha 1 type XIII collagen isoform 15 
COL13A1               0.038   alpha 1 type XIII collagen isoform 14 
COL13A1               0.038   alpha 1 type XIII collagen isoform 13 
COL13A1               0.038   alpha 1 type XIII collagen isoform 12 
COL13A1               0.038   alpha 1 type XIII collagen isoform 11 
COL13A1               0.038   alpha 1 type XIII collagen isoform 10 
COL13A1               0.038   alpha 1 type XIII collagen isoform 9 
COL13A1               0.038   alpha 1 type XIII collagen isoform 7 
COL4A3                0.038   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.038   alpha 3 type IV collagen isoform 4 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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