| Name: COL13A1 | Sequence: fasta or formatted (686aa) | NCBI GI: 22027593 | |
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Description: alpha 1 type XIII collagen isoform 11
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Referenced in:
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Other entries for this name:
alt prot [717aa] alpha 1 type XIII collagen isoform 20 alt prot [717aa] alpha 1 type XIII collagen isoform 1 alt prot [705aa] alpha 1 type XIII collagen isoform 2 alt prot [700aa] alpha 1 type XIII collagen isoform 3 alt prot [698aa] alpha 1 type XIII collagen isoform 4 alt prot [695aa] alpha 1 type XIII collagen isoform 5 alt prot [702aa] alpha 1 type XIII collagen isoform 6 alt prot [703aa] alpha 1 type XIII collagen isoform 7 alt prot [705aa] alpha 1 type XIII collagen isoform 8 alt prot [688aa] alpha 1 type XIII collagen isoform 9 alt prot [676aa] alpha 1 type XIII collagen isoform 10 alt prot [691aa] alpha 1 type XIII collagen isoform 12 alt prot [690aa] alpha 1 type XIII collagen isoform 13 alt prot [664aa] alpha 1 type XIII collagen isoform 14 alt prot [668aa] alpha 1 type XIII collagen isoform 15 alt prot [660aa] alpha 1 type XIII collagen isoform 16 alt prot [657aa] alpha 1 type XIII collagen isoform 17 alt prot [655aa] alpha 1 type XIII collagen isoform 18 alt prot [610aa] alpha 1 type XIII collagen isoform 19 | |||
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Composition:
Amino acid Percentage Count Longest homopolymer A alanine 6.7 46 3 C cysteine 1.0 7 1 D aspartate 3.2 22 1 E glutamate 6.3 43 1 F phenylalanine 0.9 6 1 G glycine 26.1 179 3 H histidine 1.6 11 1 I isoleucine 2.5 17 2 K lysine 6.6 45 2 L leucine 7.1 49 2 M methionine 1.7 12 1 N asparagine 1.6 11 1 P proline 17.3 119 3 Q glutamine 4.1 28 2 R arginine 4.8 33 4 S serine 2.8 19 1 T threonine 2.5 17 1 V valine 2.5 17 1 W tryptophan 0.3 2 1 Y tyrosine 0.4 3 1 |
Comparative genomics:
Search single species RefSeq proteins at NCBI
Search summary 
Figure data | ||
Related human proteins:Protein Relative score Description Self-match 1.000 alpha 1 type XIII collagen isoform 11 COL13A1 0.994 alpha 1 type XIII collagen isoform 4 COL13A1 0.992 alpha 1 type XIII collagen isoform 8 COL13A1 0.986 alpha 1 type XIII collagen isoform 1 COL13A1 0.981 alpha 1 type XIII collagen isoform 20 COL13A1 0.964 alpha 1 type XIII collagen isoform 13 COL13A1 0.963 alpha 1 type XIII collagen isoform 2 COL13A1 0.963 alpha 1 type XIII collagen isoform 12 COL13A1 0.959 alpha 1 type XIII collagen isoform 5 COL13A1 0.958 alpha 1 type XIII collagen isoform 6 COL13A1 0.957 alpha 1 type XIII collagen isoform 7 COL13A1 0.956 alpha 1 type XIII collagen isoform 10 COL13A1 0.954 alpha 1 type XIII collagen isoform 3 COL13A1 0.937 alpha 1 type XIII collagen isoform 15 COL13A1 0.934 alpha 1 type XIII collagen isoform 9 COL13A1 0.933 alpha 1 type XIII collagen isoform 14 COL13A1 0.924 alpha 1 type XIII collagen isoform 16 COL13A1 0.914 alpha 1 type XIII collagen isoform 18 COL13A1 0.890 alpha 1 type XIII collagen isoform 17 COL13A1 0.831 alpha 1 type XIII collagen isoform 19 COL4A5 0.308 type IV collagen alpha 5 isoform 2 precursor COL4A5 0.305 type IV collagen alpha 5 isoform 1 precursor COL4A5 0.303 type IV collagen alpha 5 isoform 3 precursor COL5A2 0.297 alpha 2 type V collagen preproprotein COL1A1 0.293 alpha 1 type I collagen preproprotein COL5A1 0.293 alpha 1 type V collagen preproprotein COL27A1 0.291 collagen, type XXVII, alpha 1 COL2A1 0.288 collagen, type II, alpha 1 isoform 1 precursor [Hom... COL2A1 0.288 collagen, type II, alpha 1 isoform 2 precursor [Hom... COL25A1 0.288 collagen, type XXV, alpha 1 isoform 1Human BLASTP results (used to prepare the table) | |||
Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.
See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.
