Guide to the Human Genome
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Name: EPHB1 Sequence: fasta or formatted (984aa) NCBI GI: 4758284
Description:

ephrin receptor EphB1 precursor

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         76           3
 C cysteine            2.6         26           1
 D aspartate           5.2         51           3
 E glutamate           5.9         58           2
 F phenylalanine       4.1         40           2
 G glycine             5.7         56           2
 H histidine           1.3         13           1
 I isoleucine          6.1         60           2
 K lysine              4.2         41           2
 L leucine             6.8         67           6
 M methionine          3.0         30           1
 N asparagine          4.3         42           2
 P proline             5.6         55           3
 Q glutamine           3.6         35           1
 R arginine            6.1         60           2
 S serine              8.4         83           2
 T threonine           6.7         66           2
 V valine              7.3         72           2
 W tryptophan          1.4         14           1
 Y tyrosine            4.0         39           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin receptor EphB1 precursor 
EPHB2                 0.758   ephrin receptor EphB2 isoform 2 precursor 
EPHB2                 0.757   ephrin receptor EphB2 isoform 1 precursor 
EPHB3                 0.702   ephrin receptor EphB3 precursor 
EPHA4                 0.578   ephrin receptor EphA4 
EPHA5                 0.566   ephrin receptor EphA5 isoform b precursor 
EPHA7                 0.564   ephrin receptor EphA7 
EPHA5                 0.561   ephrin receptor EphA5 isoform a precursor 
EPHA3                 0.554   ephrin receptor EphA3 isoform a precursor 
EPHB4                 0.538   EPH receptor B4 precursor 
EPHA6                 0.531   EPH receptor A6 isoform a 
EPHA8                 0.515   ephrin receptor EphA8 isoform 1 precursor 
EPHB6                 0.461   ephrin receptor EphB6 precursor 
EPHA2                 0.437   ephrin receptor EphA2 
EPHA10                0.405   EPH receptor A10 isofom 3 
EPHA1                 0.362   ephrin receptor EphA1 
EPHA3                 0.270   ephrin receptor EphA3 isoform b precursor 
EPHA8                 0.216   ephrin receptor EphA8 isoform 2 precursor 
EPHA10                0.128   EPH receptor A10 isoform 2 
HCK                   0.103   hemopoietic cell kinase isoform p61HCK 
INSR                  0.103   insulin receptor isoform Short precursor 
INSR                  0.103   insulin receptor isoform Long precursor 
IGF1R                 0.103   insulin-like growth factor 1 receptor precursor [Homo...
PTK2                  0.102   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.102   PTK2 protein tyrosine kinase 2 isoform a 
YES1                  0.101   viral oncogene yes-1 homolog 1 
ABL1                  0.101   c-abl oncogene 1, receptor tyrosine kinase isoform a...
ABL1                  0.101   c-abl oncogene 1, receptor tyrosine kinase isoform b...
FYN                   0.100   protein-tyrosine kinase fyn isoform a 
FYN                   0.100   protein-tyrosine kinase fyn isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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