Guide to the Human Genome
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Name: EPHA4 Sequence: fasta or formatted (986aa) NCBI GI: 4758280
Description:

ephrin receptor EphA4

Referenced in:

Ephrins and Ephrin Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         69           2
 C cysteine            2.9         29           1
 D aspartate           5.7         56           2
 E glutamate           6.1         60           2
 F phenylalanine       3.1         31           2
 G glycine             6.7         66           2
 H histidine           1.3         13           1
 I isoleucine          6.0         59           2
 K lysine              5.3         52           2
 L leucine             6.5         64           2
 M methionine          2.5         25           1
 N asparagine          5.1         50           2
 P proline             4.8         47           3
 Q glutamine           3.4         34           2
 R arginine            5.9         58           3
 S serine              7.5         74           2
 T threonine           6.2         61           2
 V valine              8.5         84           2
 W tryptophan          1.5         15           1
 Y tyrosine            4.0         39           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin receptor EphA4 
EPHA5                 0.653   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.646   ephrin receptor EphA5 isoform a precursor 
EPHA7                 0.644   ephrin receptor EphA7 
EPHA3                 0.636   ephrin receptor EphA3 isoform a precursor 
EPHA6                 0.602   EPH receptor A6 isoform a 
EPHB2                 0.578   ephrin receptor EphB2 isoform 2 precursor 
EPHA8                 0.578   ephrin receptor EphA8 isoform 1 precursor 
EPHB2                 0.577   ephrin receptor EphB2 isoform 1 precursor 
EPHB1                 0.575   ephrin receptor EphB1 precursor 
EPHB3                 0.558   ephrin receptor EphB3 precursor 
EPHA2                 0.477   ephrin receptor EphA2 
EPHB4                 0.472   EPH receptor B4 precursor 
EPHA10                0.439   EPH receptor A10 isofom 3 
EPHA1                 0.389   ephrin receptor EphA1 
EPHB6                 0.382   ephrin receptor EphB6 precursor 
EPHA3                 0.332   ephrin receptor EphA3 isoform b precursor 
EPHA8                 0.258   ephrin receptor EphA8 isoform 2 precursor 
EPHA10                0.149   EPH receptor A10 isoform 2 
HCK                   0.104   hemopoietic cell kinase isoform p61HCK 
FYN                   0.102   protein-tyrosine kinase fyn isoform a 
YES1                  0.100   viral oncogene yes-1 homolog 1 
SRC                   0.100   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.100   proto-oncogene tyrosine-protein kinase SRC 
FYN                   0.100   protein-tyrosine kinase fyn isoform b 
PTK2                  0.098   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.098   PTK2 protein tyrosine kinase 2 isoform a 
LYN                   0.098   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ...
LYN                   0.098   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
LCK                   0.098   lymphocyte-specific protein tyrosine kinase precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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