Guide to the Human Genome
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Name: EPHA8 Sequence: fasta or formatted (1005aa) NCBI GI: 10140845
Description:

ephrin receptor EphA8 isoform 1 precursor

Referenced in:

Ephrins and Ephrin Receptors

Other entries for this name:
alt prot [495aa] ephrin receptor EphA8 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         91           6
 C cysteine            3.1         31           1
 D aspartate           4.8         48           2
 E glutamate           5.3         53           2
 F phenylalanine       2.9         29           1
 G glycine             7.9         79           5
 H histidine           2.3         23           2
 I isoleucine          4.3         43           2
 K lysine              2.9         29           2
 L leucine             8.7         87           5
 M methionine          2.4         24           1
 N asparagine          2.7         27           2
 P proline             6.0         60           3
 Q glutamine           3.8         38           2
 R arginine            8.1         81           2
 S serine              7.8         78           3
 T threonine           5.7         57           3
 V valine              7.3         73           3
 W tryptophan          1.8         18           1
 Y tyrosine            3.6         36           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin receptor EphA8 isoform 1 precursor 
EPHA5                 0.589   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.584   ephrin receptor EphA5 isoform a precursor 
EPHA7                 0.573   ephrin receptor EphA7 
EPHA4                 0.563   ephrin receptor EphA4 
EPHA3                 0.563   ephrin receptor EphA3 isoform a precursor 
EPHA6                 0.552   EPH receptor A6 isoform a 
EPHB1                 0.499   ephrin receptor EphB1 precursor 
EPHB2                 0.496   ephrin receptor EphB2 isoform 2 precursor 
EPHB2                 0.496   ephrin receptor EphB2 isoform 1 precursor 
EPHB3                 0.475   ephrin receptor EphB3 precursor 
EPHA2                 0.436   ephrin receptor EphA2 
EPHA8                 0.435   ephrin receptor EphA8 isoform 2 precursor 
EPHA10                0.415   EPH receptor A10 isofom 3 
EPHB4                 0.406   EPH receptor B4 precursor 
EPHB6                 0.351   ephrin receptor EphB6 precursor 
EPHA1                 0.345   ephrin receptor EphA1 
EPHA3                 0.313   ephrin receptor EphA3 isoform b precursor 
EPHA10                0.138   EPH receptor A10 isoform 2 
PTK2                  0.094   PTK2 protein tyrosine kinase 2 isoform b 
PTK2                  0.094   PTK2 protein tyrosine kinase 2 isoform a 
FYN                   0.091   protein-tyrosine kinase fyn isoform a 
LYN                   0.091   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog ...
LYN                   0.091   Yamaguchi sarcoma viral (v-yes-1) oncogene homolog is...
HCK                   0.091   hemopoietic cell kinase isoform p61HCK 
YES1                  0.091   viral oncogene yes-1 homolog 1 
LCK                   0.091   lymphocyte-specific protein tyrosine kinase precurs...
LCK                   0.091   lymphocyte-specific protein tyrosine kinase precurs...
SRC                   0.090   proto-oncogene tyrosine-protein kinase SRC 
SRC                   0.090   proto-oncogene tyrosine-protein kinase SRC 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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