Guide to the Human Genome
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Name: EPHA3 Sequence: fasta or formatted (539aa) NCBI GI: 32967314
Description:

ephrin receptor EphA3 isoform b precursor

Referenced in:

Ephrins and Ephrin Receptors

Other entries for this name:
alt prot [983aa] ephrin receptor EphA3 isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         24           2
 C cysteine            4.3         23           1
 D aspartate           5.6         30           3
 E glutamate           6.3         34           2
 F phenylalanine       4.3         23           1
 G glycine             5.2         28           2
 H histidine           1.5          8           1
 I isoleucine          5.4         29           2
 K lysine              5.2         28           2
 L leucine             6.9         37           4
 M methionine          2.2         12           1
 N asparagine          6.3         34           2
 P proline             6.1         33           2
 Q glutamine           3.7         20           1
 R arginine            5.0         27           1
 S serine              8.3         45           2
 T threonine           7.1         38           2
 V valine              6.7         36           1
 W tryptophan          1.7          9           1
 Y tyrosine            3.9         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin receptor EphA3 isoform b precursor 
EPHA3                 0.983   ephrin receptor EphA3 isoform a precursor 
EPHA5                 0.646   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.646   ephrin receptor EphA5 isoform a precursor 
EPHA6                 0.637   EPH receptor A6 isoform a 
EPHA4                 0.597   ephrin receptor EphA4 
EPHA7                 0.589   ephrin receptor EphA7 
EPHA8                 0.578   ephrin receptor EphA8 isoform 1 precursor 
EPHB2                 0.493   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.493   ephrin receptor EphB2 isoform 2 precursor 
EPHB1                 0.481   ephrin receptor EphB1 precursor 
EPHA8                 0.480   ephrin receptor EphA8 isoform 2 precursor 
EPHB3                 0.462   ephrin receptor EphB3 precursor 
EPHA10                0.450   EPH receptor A10 isofom 3 
EPHA2                 0.402   ephrin receptor EphA2 
EPHB6                 0.344   ephrin receptor EphB6 precursor 
EPHB4                 0.325   EPH receptor B4 precursor 
EPHA1                 0.325   ephrin receptor EphA1 
EPHA10                0.271   EPH receptor A10 isoform 2 
PTPRQ                 0.044   protein tyrosine phosphatase, receptor type, Q [Hom...
PTPRD                 0.036   protein tyrosine phosphatase, receptor type, D isof...
PTPRD                 0.036   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.036   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.036   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.036   protein tyrosine phosphatase, receptor type, D isofo...
TTN                   0.034   titin isoform N2-A 
TTN                   0.034   titin isoform novex-2 
TTN                   0.034   titin isoform novex-1 
TTN                   0.034   titin isoform N2-B 
NEO1                  0.034   neogenin homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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