Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EPHA8 Sequence: fasta or formatted (495aa) NCBI GI: 55770892
Description:

ephrin receptor EphA8 isoform 2 precursor

Referenced in:

Ephrins and Ephrin Receptors

Other entries for this name:
alt prot [1005aa] ephrin receptor EphA8 isoform 1 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.7         58           6
 C cysteine            4.6         23           1
 D aspartate           5.1         25           1
 E glutamate           4.8         24           2
 F phenylalanine       2.4         12           1
 G glycine             6.1         30           2
 H histidine           2.0         10           1
 I isoleucine          2.8         14           1
 K lysine              2.0         10           2
 L leucine             8.5         42           2
 M methionine          1.2          6           1
 N asparagine          3.8         19           2
 P proline             7.7         38           2
 Q glutamine           3.4         17           2
 R arginine            7.3         36           3
 S serine              9.1         45           3
 T threonine           4.8         24           2
 V valine              7.1         35           2
 W tryptophan          2.4         12           1
 Y tyrosine            3.0         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ephrin receptor EphA8 isoform 2 precursor 
EPHA8                 0.878   ephrin receptor EphA8 isoform 1 precursor 
EPHA5                 0.527   ephrin receptor EphA5 isoform b precursor 
EPHA5                 0.527   ephrin receptor EphA5 isoform a precursor 
EPHA3                 0.526   ephrin receptor EphA3 isoform b precursor 
EPHA3                 0.526   ephrin receptor EphA3 isoform a precursor 
EPHA6                 0.520   EPH receptor A6 isoform a 
EPHA4                 0.509   ephrin receptor EphA4 
EPHA7                 0.497   ephrin receptor EphA7 
EPHB1                 0.423   ephrin receptor EphB1 precursor 
EPHB2                 0.414   ephrin receptor EphB2 isoform 1 precursor 
EPHB2                 0.414   ephrin receptor EphB2 isoform 2 precursor 
EPHA10                0.397   EPH receptor A10 isofom 3 
EPHB3                 0.387   ephrin receptor EphB3 precursor 
EPHA2                 0.387   ephrin receptor EphA2 
EPHB6                 0.310   ephrin receptor EphB6 precursor 
EPHA1                 0.299   ephrin receptor EphA1 
EPHB4                 0.287   EPH receptor B4 precursor 
EPHA10                0.279   EPH receptor A10 isoform 2 
LAMA5                 0.016   laminin alpha 5 
KIAA1324              0.015   hypothetical protein LOC57535 
TTN                   0.015   titin isoform N2-A 
TTN                   0.015   titin isoform novex-2 
TTN                   0.015   titin isoform novex-1 
TTN                   0.015   titin isoform N2-B 
TBX1                  0.011   T-box 1 isoform B 
TBX1                  0.011   T-box 1 isoform C 
TBX1                  0.011   T-box 1 isoform A 
LRP8                  0.010   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.010   low density lipoprotein receptor-related protein 8 i...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press