Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4757910
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4757910 cocaine- and amphetamine-regulated transcript [Homo
sapiens]
(116 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4757910 cocaine- and amphetamine-regulated transcript [Homo s... 232 4e-62
gi|216548056 cardiotrophin 1 isoform 2 [Homo sapiens] 32 0.14
gi|4503121 cardiotrophin 1 isoform 1 [Homo sapiens] 32 0.14
gi|223468695 zinc finger protein 572 [Homo sapiens] 29 0.91
gi|39725934 serine (or cysteine) proteinase inhibitor, clade F (... 28 1.6
gi|190341065 CP110 protein [Homo sapiens] 28 1.6
gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-l... 28 2.0
gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-l... 28 2.0
gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-l... 28 2.0
gi|239745081 PREDICTED: similar to Golgin subfamily A member 8-l... 28 2.0
gi|56237021 fibrillin 3 precursor [Homo sapiens] 27 2.7
gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens] 27 3.5
gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens] 27 3.5
gi|194578896 golgi autoantigen, golgin subfamily a, 8E [Homo sap... 27 3.5
gi|105990532 apolipoprotein B precursor [Homo sapiens] 27 4.5
gi|60218906 golgi autoantigen, golgin subfamily a, 8F [Homo sapi... 27 4.5
gi|55770876 notch4 preproprotein [Homo sapiens] 27 4.5
gi|117320513 coiled-coil domain containing 155 [Homo sapiens] 27 4.5
gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo sapi... 27 4.5
gi|7657023 dickkopf homolog 2 precursor [Homo sapiens] 26 5.9
gi|239756261 PREDICTED: similar to hect domain and RLD 2 [Homo s... 26 5.9
gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo s... 26 5.9
gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo s... 26 5.9
gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens] 26 5.9
gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondri... 26 7.7
gi|148833508 notch1 preproprotein [Homo sapiens] 26 7.7
gi|4502693 CD9 antigen [Homo sapiens] 26 7.7
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 26 7.7
gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens] 26 7.7
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens] 26 7.7
>gi|4757910 cocaine- and amphetamine-regulated transcript [Homo
sapiens]
Length = 116
Score = 232 bits (592), Expect = 4e-62
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MESSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEV 60
MESSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEV
Sbjct: 1 MESSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEV 60
Query: 61 LKKLKSKRVPIYEKKYGQVPMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLKCL 116
LKKLKSKRVPIYEKKYGQVPMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLKCL
Sbjct: 61 LKKLKSKRVPIYEKKYGQVPMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLKCL 116
>gi|216548056 cardiotrophin 1 isoform 2 [Homo sapiens]
Length = 200
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 9 LPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVL 61
L L AAL + PLL + AEL PRA + ++DA+ + + A E L
Sbjct: 86 LRLDAAALAALPPLLDAVCRRQAELNPRAPRLLRRLEDAARQARALGAAVEAL 138
>gi|4503121 cardiotrophin 1 isoform 1 [Homo sapiens]
Length = 201
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 9 LPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVL 61
L L AAL + PLL + AEL PRA + ++DA+ + + A E L
Sbjct: 87 LRLDAAALAALPPLLDAVCRRQAELNPRAPRLLRRLEDAARQARALGAAVEAL 139
>gi|223468695 zinc finger protein 572 [Homo sapiens]
Length = 529
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 65 KSKRVPIYEKKYGQVPMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLK 114
KS YE+ GQ C+ E+C ++ G + + C+C + +S L++
Sbjct: 354 KSYESSEYEESLGQ--NCNVIEECRIQLGEKPYRCCECGKSFGLSSHLIR 401
>gi|39725934 serine (or cysteine) proteinase inhibitor, clade F
(alpha-2 antiplasmin, pigment epithelium derived
factor), member 1 [Homo sapiens]
Length = 418
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/73 (30%), Positives = 33/73 (45%)
Query: 3 SSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLK 62
++ V L PL A L L L + E + D+ S+ D KEL++ + K
Sbjct: 75 TTNVLLSPLSVATALSALSLGAEQRTESIIHRALYYDLISSPDIHGTYKELLDTVTAPQK 134
Query: 63 KLKSKRVPIYEKK 75
LKS ++EKK
Sbjct: 135 NLKSASRIVFEKK 147
>gi|190341065 CP110 protein [Homo sapiens]
Length = 991
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 2 ESSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVL 61
+S + L+ G A+L L + R + E Q +ALD+ A + +K L+ +QE+L
Sbjct: 29 QSESISLIRFHGVAILSPLLNIEKRKEMQQEKQ-KALDV-EARKQVNRKKALLTRVQEIL 86
Query: 62 KKLKSKRVP 70
++ ++ P
Sbjct: 87 DNVQVRKAP 95
>gi|239745087 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 1 [Homo sapiens]
Length = 547
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 22 LLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSK 67
L G RA+ ++ + ++ S + H+K +E L+ L KLK++
Sbjct: 258 LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVETLERSLSKLKNQ 303
>gi|239745085 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 3 [Homo sapiens]
Length = 601
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 22 LLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSK 67
L G RA+ ++ + ++ S + H+K +E L+ L KLK++
Sbjct: 249 LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVETLERSLSKLKNQ 294
>gi|239745083 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 4 [Homo sapiens]
Length = 590
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 22 LLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSK 67
L G RA+ ++ + ++ S + H+K +E L+ L KLK++
Sbjct: 237 LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVETLERSLSKLKNQ 282
>gi|239745081 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 2 [Homo sapiens]
Length = 629
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 22 LLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSK 67
L G RA+ ++ + ++ S + H+K +E L+ L KLK++
Sbjct: 249 LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVETLERSLSKLKNQ 294
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 70 PIYEKKYGQVPMCDAGEQCAVRKGARIGKLCDCPRGTSCNSFLLKC 115
P+ + G++P A C + G+ C+CP G + NS LL C
Sbjct: 1719 PLDIDECGEIPAICANGICINQIGSF---RCECPAGFNYNSILLAC 1761
>gi|58761506 sarcoma antigen NY-SAR-48 isoform b [Homo sapiens]
Length = 409
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 1 MESSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKEL------- 53
+E +LL L L+ LLG D+E + LD+ S + D + +K+L
Sbjct: 253 LEGDGQQLLDALQHELVTTQRLLGELDVGDSEENVQVLDLLSELKDVTAKKDLELRRSFA 312
Query: 54 --IEALQEVLKKLKSKRVPIYEKKYGQVP 80
+E E K+ ++E+ G P
Sbjct: 313 QVLELSAEASKEAALANQEVWEETQGMAP 341
>gi|58761504 sarcoma antigen NY-SAR-48 isoform a [Homo sapiens]
Length = 410
Score = 26.9 bits (58), Expect = 3.5
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 1 MESSRVRLLPLLGAALLLMLPLLGTRAQEDAELQPRALDIYSAVDDASHEKEL------- 53
+E +LL L L+ LLG D+E + LD+ S + D + +K+L
Sbjct: 254 LEGDGQQLLDALQHELVTTQRLLGELDVGDSEENVQVLDLLSELKDVTAKKDLELRRSFA 313
Query: 54 --IEALQEVLKKLKSKRVPIYEKKYGQVP 80
+E E K+ ++E+ G P
Sbjct: 314 QVLELSAEASKEAALANQEVWEETQGMAP 342
>gi|194578896 golgi autoantigen, golgin subfamily a, 8E [Homo
sapiens]
Length = 430
Score = 26.9 bits (58), Expect = 3.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 22 LLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLK 65
L G RA+ ++ + ++ S + H+K +E L+ L KLK
Sbjct: 40 LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVETLERSLSKLK 83
>gi|105990532 apolipoprotein B precursor [Homo sapiens]
Length = 4563
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 1 MESSRVRLLPLLGAALLLMLPLLGTRAQED 30
M+ R LL LL LL+L L G RA+E+
Sbjct: 1 MDPPRPALLALLALPALLLLLLAGARAEEE 30
Score = 25.8 bits (55), Expect = 7.7
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 38 LDIYSAVDDASHEKELIEAL----QEVLKKLKSKRVP 70
+D + D HE++++ + ++++K LKSK VP
Sbjct: 735 VDHFGYTKDDKHEQDMVNGIMLSVEKLIKDLKSKEVP 771
>gi|60218906 golgi autoantigen, golgin subfamily a, 8F [Homo
sapiens]
Length = 283
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 22 LLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLK 65
L G RA+ ++ + ++ S + H+K +E L+ L KLK
Sbjct: 40 LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 83
>gi|55770876 notch4 preproprotein [Homo sapiens]
Length = 2003
Score = 26.6 bits (57), Expect = 4.5
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 82 CDAGEQCAVRKGARIGKLCDCPRG 105
C G C G+ +G +C CP+G
Sbjct: 1055 CFHGGTCEATAGSPLGFICHCPKG 1078
>gi|117320513 coiled-coil domain containing 155 [Homo sapiens]
Length = 562
Score = 26.6 bits (57), Expect = 4.5
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 15/63 (23%)
Query: 28 QEDAELQ-----------PRALDIYSAVDDASHEKELIEALQEVLKKLKSKRVPIYEKKY 76
+EDAE Q PR DI + +EL +AL V+KKL VP+ + +
Sbjct: 450 EEDAESQVTADLPVPLGAPRPGDIPENPPERPARRELQQALVPVMKKL----VPVRRRAW 505
Query: 77 GQV 79
GQ+
Sbjct: 506 GQL 508
>gi|60218910 golgi autoantigen, golgin subfamily a, 8G [Homo
sapiens]
Length = 434
Score = 26.6 bits (57), Expect = 4.5
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 22 LLGTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLK 65
L G RA+ ++ + ++ S + H+K +E L+ L KLK
Sbjct: 40 LKGERARWQQRMRKMSQEVCSLKKEKKHDKYRVEKLERSLSKLK 83
>gi|7657023 dickkopf homolog 2 precursor [Homo sapiens]
Length = 259
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 80 PMCDAGEQCAVRK-----GARIGKLCDCPRGTSC 108
P+ GE C ++ G I + CDC +G SC
Sbjct: 206 PVLHQGEVCTKQRKKGSHGLEIFQRCDCAKGLSC 239
>gi|239756261 PREDICTED: similar to hect domain and RLD 2 [Homo
sapiens]
Length = 1102
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 24 GTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSK 67
G RA+ ++ + ++Y+ + H +E L+ L KLK++
Sbjct: 368 GERARWQQRMRKMSQEVYTLKTEKEHYTHRVEGLERSLSKLKNQ 411
>gi|239750798 PREDICTED: similar to hect domain and RLD 2 [Homo
sapiens]
Length = 691
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 24 GTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSK 67
G RA+ ++ + ++Y+ + H +E L+ L KLK++
Sbjct: 358 GERARWQQRMRKMSQEVYTLKTEKEHYTHRVEGLERSLSKLKNQ 401
>gi|239745140 PREDICTED: similar to hect domain and RLD 2 [Homo
sapiens]
Length = 1052
Score = 26.2 bits (56), Expect = 5.9
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 24 GTRAQEDAELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSK 67
G RA+ ++ + ++Y+ + H +E L+ L KLK++
Sbjct: 285 GERARWQQRMRKMSQEVYTLKTEKEHYTHRVEGLERSLSKLKNQ 328
>gi|38492358 pentatricopeptide repeat domain 1 [Homo sapiens]
Length = 700
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 40 IYSAVDDASHEKELIEALQEVLKKLKSKRVPIYE 73
IYSA+ +A+ K L +LK +K RVP+ E
Sbjct: 589 IYSALINAAIRKLNYTYLISILKDMKQNRVPVNE 622
>gi|116812614 glycerol-3-phosphate acyltransferase 2, mitochondrial
[Homo sapiens]
Length = 795
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 58 QEVLKKLKSKRVPIYEKKYGQVPMCDAGEQCAVRK 92
QEVL +L + + E+ G P CD G Q RK
Sbjct: 616 QEVLDRLIQCGLLVAEETPGSRPACDTGRQRLSRK 650
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 82 CDAGEQCAVRKGARIGKLCDCPRG 105
C G CAV G +C CP G
Sbjct: 1316 CKNGGTCAVASNTARGFICKCPAG 1339
>gi|4502693 CD9 antigen [Homo sapiens]
Length = 228
Score = 25.8 bits (55), Expect = 7.7
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 37 ALDIYSAVDDASHEKELIEALQEVLK----KLKSKRVP 70
A++I +A+ SH+ E+I+ +QE K KLK+K P
Sbjct: 101 AIEIAAAIWGYSHKDEVIKEVQEFYKDTYNKLKTKDEP 138
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 27 AQEDAELQPRALDIYSA----VDDA-----SHEKELIEALQEVLKKLKSKRVPIYEKKYG 77
+Q++ + + L++ A + DA +++KE IE+L EV ++ + + I+EKK
Sbjct: 993 SQKEKQFNAKMLEMAQANSAGISDAVSRLETNQKEQIESLTEVHRRELNDVISIWEKKLN 1052
Query: 78 Q 78
Q
Sbjct: 1053 Q 1053
>gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]
Length = 949
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 31 AELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSKRVPIYEKKYG 77
A LQP ++ + ++ + + E+ L+ K+V + E+KYG
Sbjct: 91 ARLQPASVALRKQEEEEIKRSKALSDSYELSTDLQDKKVEMLERKYG 137
>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
Length = 1488
Score = 25.8 bits (55), Expect = 7.7
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 31 AELQPRALDIYSAVDDASHEKELIEALQEVLKKLKSKRVPIYEKKYG 77
A LQP ++ + ++ + + E+ L+ K+V + E+KYG
Sbjct: 296 ARLQPASVALRKQEEEEIKRSKALSDSYELSTDLQDKKVEMLERKYG 342
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,139,008
Number of Sequences: 37866
Number of extensions: 162116
Number of successful extensions: 674
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 39
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.