Guide to the Human Genome
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Name: CTF1 Sequence: fasta or formatted (201aa) NCBI GI: 4503121
Description:

cardiotrophin 1 isoform 1

Referenced in:

Cardiovascular System

Other entries for this name:
alt prot [200aa] cardiotrophin 1 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.4         35           3
 C cysteine            1.0          2           1
 D aspartate           3.5          7           1
 E glutamate           6.0         12           1
 F phenylalanine       1.5          3           1
 G glycine             7.5         15           2
 H histidine           2.5          5           1
 I isoleucine          0.5          1           1
 K lysine              1.5          3           1
 L leucine            17.4         35           2
 M methionine          0.5          1           1
 N asparagine          1.0          2           1
 P proline             9.5         19           2
 Q glutamine           4.5          9           1
 R arginine            9.5         19           2
 S serine              7.0         14           2
 T threonine           3.0          6           1
 V valine              4.5          9           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cardiotrophin 1 isoform 1 
CTF1                  0.981   cardiotrophin 1 isoform 2 
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.035   cyclin-dependent kinase inhibitor 1C isoform a 
C8orf73               0.035   hypothetical protein LOC642475 
CLCF1                 0.027   cardiotrophin-like cytokine factor 1 
LOC100288822          0.027   PREDICTED: hypothetical protein XP_002343515 
IL17RE                0.024   interleukin 17 receptor E isoform 1 
IL17RE                0.024   interleukin 17 receptor E isoform 2 
IL17RE                0.024   interleukin 17 receptor E isoform 1 
LOC100292183          0.022   PREDICTED: hypothetical protein isoform 1 
LOC100287716          0.022   PREDICTED: hypothetical protein XP_002343734 
SALL3                 0.022   sal-like 3 
ZNF367                0.022   zinc finger protein 367 
SAMD1                 0.022   sterile alpha motif domain containing 1 
TH                    0.022   tyrosine hydroxylase isoform a 
PHLDB1                0.019   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.019   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.019   pleckstrin homology-like domain, family B, member 1 ...
FAM181B               0.019   hypothetical protein LOC220382 
LOC100293902          0.019   PREDICTED: similar to hCG1986016 
HEATR2                0.019   HEAT repeat containing 2 
KRBA1                 0.019   KRAB A domain containing 1 
CARTPT                0.019   cocaine- and amphetamine-regulated transcript 
LOC100290409          0.019   PREDICTED: hypothetical protein XP_002347745 
PRX                   0.019   periaxin isoform 2 
TH                    0.016   tyrosine hydroxylase isoform c 
WWC1                  0.016   WW and C2 domain containing 1 isoform 3 
WWC1                  0.016   WW and C2 domain containing 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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