PTCD1 27008

Name: PTCD1	Sequence: fasta or formatted (700aa)		NCBI GI: 38492358
Description: pentatricopeptide repeat domain 1		Not currently referenced in the text
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.6 60 2 C cysteine 1.6 11 1 D aspartate 4.4 31 2 E glutamate 7.4 52 5 F phenylalanine 3.9 27 2 G glycine 6.0 42 2 H histidine 2.0 14 1 I isoleucine 2.3 16 2 K lysine 6.3 44 2 L leucine 13.4 94 3 M methionine 2.6 18 1 N asparagine 3.1 22 1 P proline 6.6 46 3 Q glutamine 5.6 39 2 R arginine 6.9 48 2 S serine 5.4 38 5 T threonine 5.3 37 2 V valine 5.0 35 2 W tryptophan 1.1 8 1 Y tyrosine 2.6 18 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 pentatricopeptide repeat domain 1 LRPPRC 0.014 leucine-rich PPR motif-containing protein PTCD3 0.010 pentatricopeptide repeat domain 3 CHD8 0.007 chromodomain helicase DNA binding protein 8 BAZ1A 0.007 bromodomain adjacent to zinc finger domain, 1A isofo... BAZ1A 0.007 bromodomain adjacent to zinc finger domain, 1A isofo... SF3A1 0.007 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... SF3A1 0.007 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... PRKCDBP 0.007 protein kinase C, delta binding protein ASXL2 0.006 additional sex combs like 2 CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 4 ... CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 3 ... CIZ1 0.006 CDKN1A interacting zinc finger protein 1 isoform 2 ... SBF2 0.006 SET binding factor 2 CHIC1 0.006 cysteine-rich hydrophobic domain 1 DMP1 0.005 dentin matrix acidic phosphoprotein 1 isoform 1 precu... HOXD4 0.005 homeobox D4 DMP1 0.005 dentin matrix acidic phosphoprotein 1 isoform 2 pre... ATP13A2 0.005 ATPase type 13A2 isoform 3 LOC100292934 0.005 PREDICTED: hypothetical protein LOC100290372 0.005 PREDICTED: hypothetical protein XP_002346788 LOC100288606 0.005 PREDICTED: hypothetical protein XP_002342652 SCAF1 0.005 SR-related CTD-associated factor 1 MNT 0.005 MAX binding protein SETD1B 0.005 SET domain containing 1B FAM21A 0.005 hypothetical protein LOC387680 AZI1 0.005 5-azacytidine induced 1 isoform b RCOR2 0.005 REST corepressor 2 AZI1 0.005 5-azacytidine induced 1 isoform a FAM21B 0.005 hypothetical protein LOC55747 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.