Guide to the Human Genome
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Name: PTCD1 Sequence: fasta or formatted (700aa) NCBI GI: 38492358
Description:

pentatricopeptide repeat domain 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         60           2
 C cysteine            1.6         11           1
 D aspartate           4.4         31           2
 E glutamate           7.4         52           5
 F phenylalanine       3.9         27           2
 G glycine             6.0         42           2
 H histidine           2.0         14           1
 I isoleucine          2.3         16           2
 K lysine              6.3         44           2
 L leucine            13.4         94           3
 M methionine          2.6         18           1
 N asparagine          3.1         22           1
 P proline             6.6         46           3
 Q glutamine           5.6         39           2
 R arginine            6.9         48           2
 S serine              5.4         38           5
 T threonine           5.3         37           2
 V valine              5.0         35           2
 W tryptophan          1.1          8           1
 Y tyrosine            2.6         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pentatricopeptide repeat domain 1 
LRPPRC                0.014   leucine-rich PPR motif-containing protein 
PTCD3                 0.010   pentatricopeptide repeat domain 3 
CHD8                  0.007   chromodomain helicase DNA binding protein 8 
BAZ1A                 0.007   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.007   bromodomain adjacent to zinc finger domain, 1A isofo...
SF3A1                 0.007   splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom...
SF3A1                 0.007   splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo...
PRKCDBP               0.007   protein kinase C, delta binding protein 
ASXL2                 0.006   additional sex combs like 2 
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 4 ...
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 3 ...
CIZ1                  0.006   CDKN1A interacting zinc finger protein 1 isoform 2 ...
SBF2                  0.006   SET binding factor 2 
CHIC1                 0.006   cysteine-rich hydrophobic domain 1 
DMP1                  0.005   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
HOXD4                 0.005   homeobox D4 
DMP1                  0.005   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
ATP13A2               0.005   ATPase type 13A2 isoform 3 
LOC100292934          0.005   PREDICTED: hypothetical protein 
LOC100290372          0.005   PREDICTED: hypothetical protein XP_002346788 
LOC100288606          0.005   PREDICTED: hypothetical protein XP_002342652 
SCAF1                 0.005   SR-related CTD-associated factor 1 
MNT                   0.005   MAX binding protein 
SETD1B                0.005   SET domain containing 1B 
FAM21A                0.005   hypothetical protein LOC387680 
AZI1                  0.005   5-azacytidine induced 1 isoform b 
RCOR2                 0.005   REST corepressor 2 
AZI1                  0.005   5-azacytidine induced 1 isoform a 
FAM21B                0.005   hypothetical protein LOC55747 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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