Guide to the Human Genome
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Name: LOC653061 Sequence: fasta or formatted (601aa) NCBI GI: 239745085
Description:

PREDICTED: similar to Golgin subfamily A member 8-like protein 1 isoform 3

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [629aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
alt prot [590aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
alt prot [547aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         61           3
 C cysteine            1.3          8           2
 D aspartate           3.0         18           1
 E glutamate          11.3         68           3
 F phenylalanine       1.3          8           2
 G glycine             5.8         35           3
 H histidine           3.7         22           2
 I isoleucine          1.5          9           1
 K lysine              9.0         54           3
 L leucine            10.5         63           2
 M methionine          1.2          7           1
 N asparagine          3.5         21           2
 P proline             5.7         34           2
 Q glutamine           8.8         53           2
 R arginine            7.2         43           4
 S serine              7.2         43           3
 T threonine           2.5         15           1
 V valine              3.8         23           2
 W tryptophan          1.2          7           1
 Y tyrosine            1.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Golgin subfamily A member 8-l... 
LOC653061             0.948   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.941   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.829   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.818   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.816   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.812   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.812   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.812   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.804   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.799   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653061             0.788   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.779   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.766   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.765   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.757   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.757   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.757   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.751   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.744   PREDICTED: similar to golgi autoantigen, golgin sub...
GOLGA8A               0.697   golgi autoantigen, golgin subfamily a, 8A 
GOLGA8B               0.696   golgi autoantigen, golgin subfamily a, 8B 
LOC653073             0.684   PREDICTED: Golgin subfamily A member 8-like protein...
LOC390561             0.643   PREDICTED: similar to hect domain and RLD 2 
LOC390561             0.617   PREDICTED: similar to hect domain and RLD 2 
LOC390561             0.617   PREDICTED: similar to hect domain and RLD 2 
GOLGA8E               0.502   golgi autoantigen, golgin subfamily a, 8E 
GOLGA8G               0.500   golgi autoantigen, golgin subfamily a, 8G 
GOLGA6C               0.329   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6B               0.329   golgi autoantigen, golgin subfamily a, 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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