Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC653061 Sequence: fasta or formatted (590aa) NCBI GI: 239745083
Description:

PREDICTED: similar to Golgin subfamily A member 8-like protein 1 isoform 4

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [629aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
alt prot [601aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
alt prot [547aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         56           3
 C cysteine            1.4          8           2
 D aspartate           2.9         17           1
 E glutamate          11.7         69           3
 F phenylalanine       1.4          8           2
 G glycine             5.8         34           3
 H histidine           3.6         21           2
 I isoleucine          1.5          9           1
 K lysine              9.5         56           3
 L leucine            10.2         60           2
 M methionine          1.0          6           1
 N asparagine          3.6         21           2
 P proline             5.3         31           2
 Q glutamine           8.6         51           2
 R arginine            6.9         41           4
 S serine              7.6         45           3
 T threonine           3.1         18           1
 V valine              4.1         24           2
 W tryptophan          1.0          6           1
 Y tyrosine            1.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Golgin subfamily A member 8-l... 
LOC653061             0.970   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.930   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.853   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.849   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.846   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.843   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.843   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.843   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.833   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.831   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653720             0.786   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.775   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.772   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.772   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.763   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.763   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.763   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.761   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.752   PREDICTED: similar to golgi autoantigen, golgin sub...
GOLGA8A               0.719   golgi autoantigen, golgin subfamily a, 8A 
GOLGA8B               0.718   golgi autoantigen, golgin subfamily a, 8B 
LOC653073             0.693   PREDICTED: Golgin subfamily A member 8-like protein...
LOC390561             0.638   PREDICTED: similar to hect domain and RLD 2 
LOC390561             0.636   PREDICTED: similar to hect domain and RLD 2 
LOC390561             0.632   PREDICTED: similar to hect domain and RLD 2 
GOLGA8G               0.516   golgi autoantigen, golgin subfamily a, 8G 
GOLGA8E               0.513   golgi autoantigen, golgin subfamily a, 8E 
LOC100292334          0.337   PREDICTED: similar to GOLGA8B protein, partial [Hom...
GOLGA6B               0.306   golgi autoantigen, golgin subfamily a, 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press