Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GOLGA4 Sequence: fasta or formatted (2230aa) NCBI GI: 6715600
Description:

golgi autoantigen, golgin subfamily a, 4

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0        111           2
 C cysteine            0.7         16           2
 D aspartate           4.0         90           3
 E glutamate          16.6        370           3
 F phenylalanine       1.6         35           1
 G glycine             1.6         36           2
 H histidine           2.2         48           2
 I isoleucine          4.2         93           2
 K lysine             12.7        284           3
 L leucine            12.6        280           3
 M methionine          2.3         51           2
 N asparagine          3.6         80           2
 P proline             0.9         21           2
 Q glutamine          10.1        225           3
 R arginine            4.0         89           2
 S serine              7.0        156           3
 T threonine           5.4        120           2
 V valine              4.0         90           2
 W tryptophan          0.2          5           1
 Y tyrosine            1.3         30           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   golgi autoantigen, golgin subfamily a, 4 
CENPE                 0.068   centromere protein E 
GOLGB1                0.064   golgi autoantigen, golgin subfamily b, macrogolgin ...
CENPF                 0.061   centromere protein F 
TCHH                  0.059   trichohyalin 
CEP250                0.059   centrosomal protein 2 
EEA1                  0.054   early endosome antigen 1, 162kD 
MYH11                 0.052   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.052   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
NUMA1                 0.051   nuclear mitotic apparatus protein 1 
TPR                   0.051   nuclear pore complex-associated protein TPR 
GCC2                  0.051   GRIP and coiled-coil domain-containing 2 
CEP290                0.050   centrosomal protein 290kDa 
MYH10                 0.049   myosin, heavy polypeptide 10, non-muscle 
AKAP9                 0.049   A-kinase anchor protein 9 isoform 3 
AKAP9                 0.049   A-kinase anchor protein 9 isoform 2 
MYH9                  0.048   myosin, heavy polypeptide 9, non-muscle 
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.047   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
TRIP11                0.045   thyroid hormone receptor interactor 11 
PLEC1                 0.045   plectin 1 isoform 11 
PLEC1                 0.045   plectin 1 isoform 10 
PLEC1                 0.045   plectin 1 isoform 8 
PLEC1                 0.045   plectin 1 isoform 7 
PLEC1                 0.045   plectin 1 isoform 6 
PLEC1                 0.045   plectin 1 isoform 3 
PLEC1                 0.045   plectin 1 isoform 2 
PLEC1                 0.045   plectin 1 isoform 1 
NIN                   0.044   ninein isoform 2 
NIN                   0.044   ninein isoform 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press