Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CP110 Sequence: fasta or formatted (991aa) NCBI GI: 190341065
Description:

CP110 protein

Referenced in:

Centrosome

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         64           2
 C cysteine            1.7         17           2
 D aspartate           4.4         44           1
 E glutamate           8.3         82           2
 F phenylalanine       2.9         29           2
 G glycine             3.8         38           1
 H histidine           2.2         22           2
 I isoleucine          4.2         42           2
 K lysine              8.4         83           2
 L leucine             9.3         92           2
 M methionine          3.5         35           1
 N asparagine          5.5         55           2
 P proline             4.8         48           1
 Q glutamine           6.1         60           2
 R arginine            5.2         52           3
 S serine             10.6        105           2
 T threonine           4.8         48           1
 V valine              5.8         57           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   CP110 protein 
KIF20B                0.011   M-phase phosphoprotein 1 
KIF3C                 0.011   kinesin family member 3C 
CCDC88A               0.010   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.010   coiled-coil domain containing 88A isoform 1 
CCDC91                0.010   GGA binding partner 
CGN                   0.010   cingulin 
CROCC                 0.009   ciliary rootlet coiled-coil 
TPR                   0.009   nuclear pore complex-associated protein TPR 
HMMR                  0.009   hyaluronan-mediated motility receptor isoform d [Ho...
HMMR                  0.009   hyaluronan-mediated motility receptor isoform a [Ho...
HMMR                  0.009   hyaluronan-mediated motility receptor isoform c [Ho...
HMMR                  0.009   hyaluronan-mediated motility receptor isoform b [Ho...
GBP2                  0.009   guanylate binding protein 2, interferon-inducible [H...
MYO18A                0.009   myosin 18A isoform b 
MYO18A                0.009   myosin 18A isoform a 
INCENP                0.009   inner centromere protein antigens 135/155kDa isofor...
KTN1                  0.008   kinectin 1 isoform c 
PMFBP1                0.008   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.008   polyamine modulated factor 1 binding protein 1 isof...
ITSN1                 0.008   intersectin 1 isoform ITSN-s 
ITSN1                 0.008   intersectin 1 isoform ITSN-l 
JAKMIP2               0.008   Janus kinase and microtubule interacting protein 2 [...
EIF5B                 0.008   eukaryotic translation initiation factor 5B 
LOC727832             0.008   golgi autoantigen, golgin subfamily a-like 
LMOD2                 0.008   leiomodin 2 (cardiac) 
CENPE                 0.008   centromere protein E 
PIBF1                 0.008   progesterone-induced blocking factor 1 
MAP7D1                0.008   MAP7 domain containing 1 
TRIM21                0.008   tripartite motif protein 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press