Guide to the Human Genome
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Name: LOC653061 Sequence: fasta or formatted (629aa) NCBI GI: 239745081
Description:

PREDICTED: similar to Golgin subfamily A member 8-like protein 1 isoform 2

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt prot [590aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
alt prot [601aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
alt prot [547aa] PREDICTED: similar to Golgin subfamily A member 8-like protein 1 ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         61           3
 C cysteine            1.3          8           2
 D aspartate           3.3         21           1
 E glutamate          11.6         73           3
 F phenylalanine       1.3          8           2
 G glycine             5.7         36           3
 H histidine           3.5         22           2
 I isoleucine          1.7         11           1
 K lysine              8.6         54           3
 L leucine            10.8         68           2
 M methionine          1.4          9           1
 N asparagine          3.3         21           2
 P proline             5.6         35           2
 Q glutamine           9.2         58           2
 R arginine            7.0         44           4
 S serine              7.3         46           3
 T threonine           2.5         16           1
 V valine              3.5         22           2
 W tryptophan          1.1          7           1
 Y tyrosine            1.4          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Golgin subfamily A member 8-l... 
LOC653061             0.902   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.871   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653720             0.829   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.818   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.817   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.811   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.810   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.810   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.799   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.795   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653720             0.759   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.746   PREDICTED: Golgin subfamily A member 8-like protein...
LOC728498             0.742   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.738   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.738   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.738   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.732   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.727   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653073             0.725   PREDICTED: Golgin subfamily A member 8-like protein...
LOC390561             0.697   PREDICTED: similar to hect domain and RLD 2 
GOLGA8A               0.647   golgi autoantigen, golgin subfamily a, 8A 
GOLGA8B               0.646   golgi autoantigen, golgin subfamily a, 8B 
LOC653061             0.628   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA8G               0.573   golgi autoantigen, golgin subfamily a, 8G 
GOLGA8E               0.572   golgi autoantigen, golgin subfamily a, 8E 
LOC390561             0.553   PREDICTED: similar to hect domain and RLD 2 
LOC390561             0.552   PREDICTED: similar to hect domain and RLD 2 
GOLGA6B               0.394   golgi autoantigen, golgin subfamily a, 6B 
GOLGA6                0.393   golgi autoantigen, golgin subfamily a, 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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