Guide to the Human Genome
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Name: SGK493 Sequence: fasta or formatted (493aa) NCBI GI: 208431817
Description:

protein kinase-like protein SgK493

Referenced in:

Additional Serine / Threonine Protein Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         41           2
 C cysteine            3.0         15           1
 D aspartate           4.1         20           2
 E glutamate           5.3         26           2
 F phenylalanine       3.4         17           3
 G glycine             9.7         48           2
 H histidine           2.2         11           2
 I isoleucine          1.8          9           1
 K lysine              2.0         10           1
 L leucine            11.2         55           2
 M methionine          1.2          6           1
 N asparagine          2.4         12           1
 P proline             9.1         45           2
 Q glutamine           3.9         19           1
 R arginine            8.9         44           4
 S serine              6.9         34           3
 T threonine           4.9         24           2
 V valine              6.3         31           2
 W tryptophan          1.6          8           1
 Y tyrosine            3.7         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein kinase-like protein SgK493 
COL7A1                0.029   alpha 1 type VII collagen precursor 
TESK1                 0.027   testis-specific protein kinase 1 
VPS37C                0.025   vacuolar protein sorting 37C 
COL5A3                0.024   collagen, type V, alpha 3 preproprotein 
LOC729370             0.024   PREDICTED: hypothetical protein 
TAF4                  0.024   TBP-associated factor 4 
FLJ37078              0.023   hypothetical protein LOC222183 
SFPQ                  0.023   splicing factor proline/glutamine rich (polypyrimidin...
CPSF6                 0.022   cleavage and polyadenylation specific factor 6, 68 ...
PDCD7                 0.022   programmed cell death 7 
COL9A3                0.022   alpha 3 type IX collagen 
COL8A1                0.022   alpha 1 type VIII collagen precursor 
COL8A1                0.022   alpha 1 type VIII collagen precursor 
COL1A1                0.021   alpha 1 type I collagen preproprotein 
DDR1                  0.021   discoidin domain receptor family, member 1 isoform a...
COL8A2                0.021   collagen, type VIII, alpha 2 
LMTK3                 0.021   lemur tyrosine kinase 3 
COL16A1               0.021   alpha 1 type XVI collagen precursor 
EMID2                 0.021   EMI domain containing 2 
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.020   SWI/SNF-related matrix-associated actin-dependent re...
NFATC4                0.020   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.020   nuclear factor of activated T-cells, cytoplasmic, ca...
LOC645722             0.020   PREDICTED: similar to hCG2037003 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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