Guide to the Human Genome
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Name: LOC100287810 Sequence: fasta or formatted (154aa) NCBI GI: 239741836
Description:

PREDICTED: hypothetical protein XP_002342322

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.9         26           4
 C cysteine            3.2          5           2
 D aspartate           3.2          5           1
 E glutamate           6.5         10           2
 F phenylalanine       1.9          3           1
 G glycine             7.1         11           2
 H histidine           1.9          3           1
 I isoleucine          1.9          3           1
 K lysine              2.6          4           2
 L leucine             5.8          9           2
 M methionine          1.3          2           1
 N asparagine          1.9          3           1
 P proline             8.4         13           1
 Q glutamine           3.9          6           1
 R arginine           11.0         17           2
 S serine              8.4         13           1
 T threonine           2.6          4           1
 V valine              8.4         13           2
 W tryptophan          1.3          2           1
 Y tyrosine            1.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342322 
LOC100292319          1.000   PREDICTED: hypothetical protein 
LOC100290707          1.000   PREDICTED: hypothetical protein XP_002346482 
MAZ                   0.035   MYC-associated zinc finger protein isoform 2 
MAZ                   0.035   MYC-associated zinc finger protein isoform 1 
KRTAP4-6              0.028   PREDICTED: keratin associated protein 4.6 
EIF2AK3               0.028   eukaryotic translation initiation factor 2-alpha ki...
C2orf28               0.028   apoptosis related protein 3 isoform b 
FAM48B1               0.024   hypothetical protein LOC100130302 
THBD                  0.024   thrombomodulin precursor 
FOXE1                 0.024   forkhead box E1 
HOXA13                0.021   homeobox A13 
LOC100291835          0.021   PREDICTED: hypothetical protein XP_002346266 
SALL3                 0.021   sal-like 3 
LOC100292623          0.021   PREDICTED: hypothetical protein 
LOC100290254          0.021   PREDICTED: hypothetical protein XP_002347960 
ZMIZ1                 0.021   retinoic acid induced 17 
C10orf140             0.021   hypothetical protein LOC387640 
LOC100293652          0.017   PREDICTED: hypothetical protein 
LOC100291016          0.017   PREDICTED: hypothetical protein XP_002347804 
LOC100287809          0.017   PREDICTED: hypothetical protein XP_002343597 
SPAG8                 0.017   sperm associated antigen 8 isoform 1 
SPAG8                 0.017   sperm associated antigen 8 isoform 2 
C1orf68               0.017   skin-specific protein 32 
EVX2                  0.017   even-skipped homeobox 2 
PNMAL2                0.017   PNMA-like 2 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100291075          0.017   PREDICTED: hypothetical protein XP_002346651 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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