Guide to the Human Genome
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Name: IGSF9B Sequence: fasta or formatted (1349aa) NCBI GI: 148886752
Description:

immunoglobulin superfamily, member 9B

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        102           3
 C cysteine            1.1         15           1
 D aspartate           3.3         45           2
 E glutamate           6.7         91           2
 F phenylalanine       3.3         44           2
 G glycine             7.6        103           2
 H histidine           1.7         23           2
 I isoleucine          3.6         49           2
 K lysine              3.5         47           2
 L leucine             8.6        116           2
 M methionine          1.6         21           2
 N asparagine          1.9         25           1
 P proline            12.5        169           3
 Q glutamine           4.2         57           2
 R arginine            5.9         79           2
 S serine              8.9        120           4
 T threonine           7.0         94           2
 V valine              6.2         83           2
 W tryptophan          1.7         23           1
 Y tyrosine            3.2         43           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily, member 9B 
IGSF9                 0.268   immunoglobulin superfamily, member 9 isoform a [Hom...
IGSF9                 0.258   immunoglobulin superfamily, member 9 isoform b [Hom...
HMCN1                 0.051   hemicentin 1 
ROBO2                 0.047   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.047   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO1                 0.047   roundabout 1 isoform b 
ROBO1                 0.047   roundabout 1 isoform a 
PRTG                  0.047   protogenin 
CNTN6                 0.046   contactin 6 
LOC100292387          0.046   PREDICTED: similar to hemicentin 2 
ROBO1                 0.046   roundabout 1 isoform d 
ROBO1                 0.046   roundabout 1 isoform c 
LOC642132             0.046   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.046   PREDICTED: similar to roundabout 1 isoform 2 
HMCN2                 0.046   PREDICTED: hemicentin 2 
HMCN2                 0.046   PREDICTED: hemicentin 2 
HMCN2                 0.046   PREDICTED: hemicentin 2 
NEO1                  0.045   neogenin homolog 1 
NRCAM                 0.044   neuronal cell adhesion molecule isoform B precursor ...
CNTN3                 0.043   contactin 3 
CNTN4                 0.043   contactin 4 isoform a precursor 
NRCAM                 0.043   neuronal cell adhesion molecule isoform A precursor ...
DCC                   0.043   deleted in colorectal carcinoma 
PXDN                  0.042   peroxidasin 
PXDNL                 0.041   peroxidasin homolog-like 
NFASC                 0.041   neurofascin isoform 3 precursor 
NFASC                 0.041   neurofascin isoform 4 precursor 
CNTN5                 0.041   contactin 5 isoform long 
CNTN5                 0.041   contactin 5 isoform short 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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