Guide to the Human Genome
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Name: ROBO3 Sequence: fasta or formatted (1386aa) NCBI GI: 48476182
Description:

roundabout, axon guidance receptor, homolog 3

Referenced in:

Neurons

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8        122           3
 C cysteine            1.4         20           2
 D aspartate           3.1         43           2
 E glutamate           6.4         89           3
 F phenylalanine       1.7         24           2
 G glycine             9.5        131           2
 H histidine           1.4         20           1
 I isoleucine          2.0         28           1
 K lysine              2.2         31           2
 L leucine             9.3        129           3
 M methionine          1.7         23           2
 N asparagine          2.4         33           1
 P proline            11.8        163           5
 Q glutamine           5.0         69           2
 R arginine            7.1         98           2
 S serine             10.6        147           4
 T threonine           4.6         64           1
 V valine              6.8         94           3
 W tryptophan          2.2         31           1
 Y tyrosine            1.9         27           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   roundabout, axon guidance receptor, homolog 3 
ROBO2                 0.362   roundabout, axon guidance receptor, homolog 2 isofor...
ROBO2                 0.361   roundabout, axon guidance receptor, homolog 2 isofo...
LOC642132             0.337   PREDICTED: similar to roundabout 1 isoform 1 
ROBO1                 0.336   roundabout 1 isoform d 
ROBO1                 0.333   roundabout 1 isoform b 
ROBO1                 0.332   roundabout 1 isoform a 
LOC642132             0.331   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.329   roundabout 1 isoform c 
DSCAML1               0.072   Down syndrome cell adhesion molecule like 1 
HMCN1                 0.069   hemicentin 1 
HMCN2                 0.068   PREDICTED: hemicentin 2 
HMCN2                 0.068   PREDICTED: hemicentin 2 
HMCN2                 0.068   PREDICTED: hemicentin 2 
SDK2                  0.067   sidekick 2 
DCC                   0.065   deleted in colorectal carcinoma 
DSCAM                 0.065   Down syndrome cell adhesion molecule isoform CHD2-42...
NEO1                  0.065   neogenin homolog 1 
CNTN4                 0.062   contactin 4 isoform a precursor 
PXDN                  0.062   peroxidasin 
CNTN3                 0.062   contactin 3 
SDK1                  0.060   sidekick 1 
CNTN2                 0.060   contactin 2 precursor 
LOC100292387          0.057   PREDICTED: similar to hemicentin 2 
PXDNL                 0.057   peroxidasin homolog-like 
NFASC                 0.057   neurofascin isoform 5 precursor 
NFASC                 0.057   neurofascin isoform 1 precursor 
ROBO4                 0.056   roundabout homolog 4, magic roundabout 
NFASC                 0.055   neurofascin isoform 6 precursor 
L1CAM                 0.054   L1 cell adhesion molecule isoform 3 precursor [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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