Guide to the Human Genome
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Name: S100A10 Sequence: fasta or formatted (97aa) NCBI GI: 4506761
Description:

S100 calcium binding protein A10

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          5           1
 C cysteine            2.1          2           1
 D aspartate           8.2          8           1
 E glutamate           6.2          6           1
 F phenylalanine       9.3          9           2
 G glycine             7.2          7           1
 H histidine           3.1          3           1
 I isoleucine          3.1          3           1
 K lysine             12.4         12           2
 L leucine             8.2          8           1
 M methionine          8.2          8           2
 N asparagine          2.1          2           1
 P proline             3.1          3           1
 Q glutamine           5.2          5           1
 R arginine            2.1          2           1
 S serine              3.1          3           1
 T threonine           4.1          4           1
 V valine              5.2          5           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A10 
LOC731414             0.655   PREDICTED: similar to S100 calcium binding protein ...
LOC731414             0.655   PREDICTED: similar to S100 calcium binding protein ...
LOC100288534          0.655   PREDICTED: hypothetical protein XP_002343611 
S100Z                 0.390   S100 calcium binding protein Z 
S100A1                0.362   S100 calcium binding protein A1 
S100P                 0.311   S100 calcium binding protein P 
S100A11               0.282   S100 calcium binding protein A11 
S100A4                0.249   S100 calcium-binding protein A4 
S100A4                0.249   S100 calcium-binding protein A4 
S100B                 0.243   S100 calcium-binding protein, beta 
S100A2                0.237   S100 calcium binding protein A2 
FLG2                  0.169   filaggrin family member 2 
RPTN                  0.169   repetin 
S100A5                0.158   S100 calcium binding protein A5 
S100A12               0.158   S100 calcium-binding protein A12 
S100A9                0.141   S100 calcium-binding protein A9 
S100A16               0.124   S100 calcium binding protein A16 
S100A6                0.124   S100 calcium-binding protein A6 
TCHH                  0.119   trichohyalin 
S100G                 0.119   calbindin 3 
HRNR                  0.113   hornerin 
S100A14               0.107   S100 calcium binding protein A14 
CRNN                  0.107   cornulin 
S100A3                0.107   S100 calcium binding protein A3 
S100A8                0.102   S100 calcium-binding protein A8 
S100A7A               0.102   S100 calcium binding protein A7-like 1 
FLG                   0.085   filaggrin 
S100A7L2              0.085   S100 calcium binding protein A7-like 2 
S100A7                0.073   S100 calcium binding protein A7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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