Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: S100A7L2 Sequence: fasta or formatted (112aa) NCBI GI: 194294552
Description:

S100 calcium binding protein A7-like 2

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.6          4           1
 C cysteine            1.8          2           1
 D aspartate           9.8         11           2
 E glutamate           4.5          5           1
 F phenylalanine       4.5          5           1
 G glycine             8.9         10           2
 H histidine           2.7          3           2
 I isoleucine          4.5          5           1
 K lysine              9.8         11           2
 L leucine            10.7         12           2
 M methionine          8.0          9           1
 N asparagine          6.2          7           1
 P proline             4.5          5           1
 Q glutamine           1.8          2           1
 R arginine            1.8          2           1
 S serine              8.9         10           2
 T threonine           0.9          1           1
 V valine              4.5          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A7-like 2 
S100A7A               0.490   S100 calcium binding protein A7-like 1 
S100A7                0.461   S100 calcium binding protein A7 
S100A11               0.083   S100 calcium binding protein A11 
S100A6                0.078   S100 calcium-binding protein A6 
S100P                 0.078   S100 calcium binding protein P 
S100A9                0.073   S100 calcium-binding protein A9 
S100A10               0.073   S100 calcium binding protein A10 
S100B                 0.068   S100 calcium-binding protein, beta 
S100A2                0.063   S100 calcium binding protein A2 
SNTN                  0.063   sentan, cilia apical structure protein 
S100A1                0.058   S100 calcium binding protein A1 
S100Z                 0.049   S100 calcium binding protein Z 
S100A5                0.049   S100 calcium binding protein A5 
HRNR                  0.029   hornerin 
EFHD2                 0.029   EF-hand domain family, member D2 
S100A12               0.029   S100 calcium-binding protein A12 
FLG                   0.024   filaggrin 
UTP20                 0.019   down-regulated in metastasis 
LOC653877             0.019   PREDICTED: similar to Temporarily Assigned Gene name...
S100A13               0.019   S100 calcium binding protein A13 
S100A13               0.019   S100 calcium binding protein A13 
S100A13               0.019   S100 calcium binding protein A13 
S100A13               0.019   S100 calcium binding protein A13 
S100A13               0.019   S100 calcium binding protein A13 
FLG2                  0.019   filaggrin family member 2 
S100G                 0.015   calbindin 3 
S100A8                0.015   S100 calcium-binding protein A8 
FREQ                  0.015   frequenin homolog isoform 2 
FREQ                  0.015   frequenin homolog isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press