Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: S100A8 Sequence: fasta or formatted (93aa) NCBI GI: 21614544
Description:

S100 calcium-binding protein A8

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          6           2
 C cysteine            1.1          1           1
 D aspartate           6.5          6           2
 E glutamate           9.7          9           2
 F phenylalanine       4.3          4           1
 G glycine             4.3          4           1
 H histidine           5.4          5           1
 I isoleucine          7.5          7           2
 K lysine             12.9         12           2
 L leucine            10.8         10           2
 M methionine          2.2          2           1
 N asparagine          4.3          4           1
 P proline             1.1          1           1
 Q glutamine           2.2          2           1
 R arginine            2.2          2           1
 S serine              4.3          4           1
 T threonine           3.2          3           1
 V valine              6.5          6           1
 W tryptophan          1.1          1           1
 Y tyrosine            4.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium-binding protein A8 
S100A12               0.235   S100 calcium-binding protein A12 
S100P                 0.229   S100 calcium binding protein P 
S100A1                0.205   S100 calcium binding protein A1 
S100B                 0.193   S100 calcium-binding protein, beta 
S100A9                0.181   S100 calcium-binding protein A9 
S100A4                0.163   S100 calcium-binding protein A4 
S100A4                0.163   S100 calcium-binding protein A4 
CRNN                  0.163   cornulin 
S100A5                0.151   S100 calcium binding protein A5 
RPTN                  0.151   repetin 
S100A2                0.145   S100 calcium binding protein A2 
S100Z                 0.145   S100 calcium binding protein Z 
FLG2                  0.139   filaggrin family member 2 
S100G                 0.133   calbindin 3 
FLG                   0.127   filaggrin 
S100A6                0.127   S100 calcium-binding protein A6 
S100A11               0.127   S100 calcium binding protein A11 
HRNR                  0.120   hornerin 
S100A16               0.114   S100 calcium binding protein A16 
S100A10               0.108   S100 calcium binding protein A10 
TCHH                  0.108   trichohyalin 
S100A13               0.108   S100 calcium binding protein A13 
S100A13               0.108   S100 calcium binding protein A13 
S100A13               0.108   S100 calcium binding protein A13 
S100A13               0.108   S100 calcium binding protein A13 
S100A13               0.108   S100 calcium binding protein A13 
S100A7A               0.102   S100 calcium binding protein A7-like 1 
S100A7                0.102   S100 calcium binding protein A7 
HPCA                  0.048   hippocalcin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press