Guide to the Human Genome
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Name: S100A5 Sequence: fasta or formatted (110aa) NCBI GI: 4506767
Description:

S100 calcium binding protein A5

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          5           2
 C cysteine            1.8          2           1
 D aspartate           6.4          7           2
 E glutamate          10.9         12           1
 F phenylalanine       4.5          5           2
 G glycine             2.7          3           1
 H histidine           3.6          4           1
 I isoleucine          3.6          4           1
 K lysine             10.9         12           2
 L leucine            13.6         15           1
 M methionine          6.4          7           1
 N asparagine          2.7          3           1
 P proline             1.8          2           1
 Q glutamine           0.9          1           1
 R arginine            1.8          2           1
 S serine              9.1         10           2
 T threonine           7.3          8           2
 V valine              2.7          3           1
 W tryptophan          1.8          2           1
 Y tyrosine            2.7          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A5 
S100A6                0.350   S100 calcium-binding protein A6 
S100A4                0.340   S100 calcium-binding protein A4 
S100A4                0.340   S100 calcium-binding protein A4 
S100A2                0.330   S100 calcium binding protein A2 
S100A1                0.295   S100 calcium binding protein A1 
S100Z                 0.265   S100 calcium binding protein Z 
S100B                 0.265   S100 calcium-binding protein, beta 
S100A3                0.225   S100 calcium binding protein A3 
S100P                 0.205   S100 calcium binding protein P 
S100A11               0.170   S100 calcium binding protein A11 
S100A13               0.170   S100 calcium binding protein A13 
S100A13               0.170   S100 calcium binding protein A13 
S100A13               0.170   S100 calcium binding protein A13 
S100A13               0.170   S100 calcium binding protein A13 
S100A13               0.170   S100 calcium binding protein A13 
S100A12               0.170   S100 calcium-binding protein A12 
S100A9                0.160   S100 calcium-binding protein A9 
FLG2                  0.155   filaggrin family member 2 
S100A10               0.140   S100 calcium binding protein A10 
S100A8                0.125   S100 calcium-binding protein A8 
S100G                 0.125   calbindin 3 
HRNR                  0.120   hornerin 
FLG                   0.110   filaggrin 
S100A16               0.085   S100 calcium binding protein A16 
RPTN                  0.080   repetin 
S100A14               0.075   S100 calcium binding protein A14 
CRNN                  0.075   cornulin 
S100A7A               0.070   S100 calcium binding protein A7-like 1 
LOC731414             0.065   PREDICTED: similar to S100 calcium binding protein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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