Guide to the Human Genome
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Name: S100A6 Sequence: fasta or formatted (90aa) NCBI GI: 7657532
Description:

S100 calcium-binding protein A6

Referenced in:

Calmodulin and Calcium
Growth Hormone and Related Hormones
Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9          8           1
 C cysteine            1.1          1           1
 D aspartate           6.7          6           1
 E glutamate          10.0          9           1
 F phenylalanine       3.3          3           1
 G glycine             6.7          6           1
 H histidine           2.2          2           1
 I isoleucine          6.7          6           1
 K lysine             10.0          9           2
 L leucine            15.6         14           2
 M methionine          2.2          2           1
 N asparagine          3.3          3           1
 P proline             1.1          1           1
 Q glutamine           5.6          5           1
 R arginine            3.3          3           1
 S serine              3.3          3           1
 T threonine           3.3          3           1
 V valine              3.3          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium-binding protein A6 
S100A4                0.484   S100 calcium-binding protein A4 
S100A4                0.484   S100 calcium-binding protein A4 
S100A5                0.458   S100 calcium binding protein A5 
S100A2                0.405   S100 calcium binding protein A2 
S100A1                0.340   S100 calcium binding protein A1 
S100A3                0.327   S100 calcium binding protein A3 
S100B                 0.301   S100 calcium-binding protein, beta 
S100Z                 0.301   S100 calcium binding protein Z 
S100P                 0.261   S100 calcium binding protein P 
S100A12               0.229   S100 calcium-binding protein A12 
S100A11               0.209   S100 calcium binding protein A11 
S100A9                0.190   S100 calcium-binding protein A9 
FLG2                  0.170   filaggrin family member 2 
S100G                 0.150   calbindin 3 
S100A10               0.144   S100 calcium binding protein A10 
S100A13               0.144   S100 calcium binding protein A13 
S100A13               0.144   S100 calcium binding protein A13 
S100A13               0.144   S100 calcium binding protein A13 
S100A13               0.144   S100 calcium binding protein A13 
S100A13               0.144   S100 calcium binding protein A13 
S100A8                0.137   S100 calcium-binding protein A8 
FLG                   0.137   filaggrin 
HRNR                  0.124   hornerin 
S100A7A               0.124   S100 calcium binding protein A7-like 1 
S100A16               0.124   S100 calcium binding protein A16 
S100A7L2              0.105   S100 calcium binding protein A7-like 2 
RPTN                  0.098   repetin 
S100A7                0.092   S100 calcium binding protein A7 
TCHH                  0.078   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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