Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: S100A7 Sequence: fasta or formatted (101aa) NCBI GI: 115298657
Description:

S100 calcium binding protein A7

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9          6           2
 C cysteine            2.0          2           1
 D aspartate           9.9         10           2
 E glutamate           5.9          6           1
 F phenylalanine       5.9          6           1
 G glycine             5.9          6           2
 H histidine           3.0          3           1
 I isoleucine          5.9          6           2
 K lysine             11.9         12           2
 L leucine             6.9          7           2
 M methionine          5.0          5           2
 N asparagine          5.0          5           1
 P proline             3.0          3           1
 Q glutamine           3.0          3           1
 R arginine            3.0          3           2
 S serine              8.9          9           1
 T threonine           5.0          5           1
 V valine              1.0          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A7 
S100A7A               0.924   S100 calcium binding protein A7-like 1 
S100A7L2              0.516   S100 calcium binding protein A7-like 2 
S100A11               0.136   S100 calcium binding protein A11 
S100A12               0.120   S100 calcium-binding protein A12 
S100A9                0.114   S100 calcium-binding protein A9 
S100B                 0.103   S100 calcium-binding protein, beta 
S100Z                 0.103   S100 calcium binding protein Z 
S100G                 0.098   calbindin 3 
S100A16               0.092   S100 calcium binding protein A16 
S100A8                0.092   S100 calcium-binding protein A8 
FLG                   0.092   filaggrin 
FLG2                  0.087   filaggrin family member 2 
S100P                 0.082   S100 calcium binding protein P 
S100A6                0.076   S100 calcium-binding protein A6 
S100A4                0.071   S100 calcium-binding protein A4 
S100A4                0.071   S100 calcium-binding protein A4 
S100A10               0.071   S100 calcium binding protein A10 
S100A5                0.065   S100 calcium binding protein A5 
S100A2                0.065   S100 calcium binding protein A2 
S100A13               0.054   S100 calcium binding protein A13 
S100A13               0.054   S100 calcium binding protein A13 
S100A13               0.054   S100 calcium binding protein A13 
S100A13               0.054   S100 calcium binding protein A13 
S100A13               0.054   S100 calcium binding protein A13 
RPTN                  0.054   repetin 
S100A1                0.054   S100 calcium binding protein A1 
HRNR                  0.054   hornerin 
SNTN                  0.043   sentan, cilia apical structure protein 
GUCA1B                0.038   guanylate cyclase activator 1B (retina) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press