Guide to the Human Genome
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Name: S100A3 Sequence: fasta or formatted (101aa) NCBI GI: 4506763
Description:

S100 calcium binding protein A3

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9          8           2
 C cysteine            9.9         10           1
 D aspartate           5.9          6           1
 E glutamate          10.9         11           1
 F phenylalanine       5.0          5           1
 G glycine             2.0          2           1
 H histidine           1.0          1           1
 I isoleucine          1.0          1           1
 K lysine              6.9          7           1
 L leucine             9.9         10           2
 M methionine          2.0          2           1
 N asparagine          2.0          2           1
 P proline             5.0          5           2
 Q glutamine           5.0          5           1
 R arginine            4.0          4           1
 S serine              4.0          4           1
 T threonine           5.0          5           1
 V valine              5.9          6           1
 W tryptophan          1.0          1           1
 Y tyrosine            5.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A3 
S100A4                0.347   S100 calcium-binding protein A4 
S100A4                0.347   S100 calcium-binding protein A4 
S100A2                0.306   S100 calcium binding protein A2 
S100A6                0.255   S100 calcium-binding protein A6 
S100A5                0.230   S100 calcium binding protein A5 
S100A1                0.224   S100 calcium binding protein A1 
S100B                 0.219   S100 calcium-binding protein, beta 
S100Z                 0.199   S100 calcium binding protein Z 
S100A11               0.179   S100 calcium binding protein A11 
S100P                 0.168   S100 calcium binding protein P 
S100A9                0.112   S100 calcium-binding protein A9 
S100A12               0.102   S100 calcium-binding protein A12 
S100A10               0.097   S100 calcium binding protein A10 
FLG2                  0.077   filaggrin family member 2 
RPTN                  0.071   repetin 
HRNR                  0.061   hornerin 
S100A13               0.061   S100 calcium binding protein A13 
S100A13               0.061   S100 calcium binding protein A13 
S100A13               0.061   S100 calcium binding protein A13 
S100A13               0.061   S100 calcium binding protein A13 
S100A13               0.061   S100 calcium binding protein A13 
S100A16               0.056   S100 calcium binding protein A16 
FLG                   0.046   filaggrin 
S100A8                0.036   S100 calcium-binding protein A8 
CRNN                  0.031   cornulin 
SNTN                  0.031   sentan, cilia apical structure protein 
EPX                   0.026   eosinophil peroxidase 
S100G                 0.026   calbindin 3 
KIF26B                0.020   kinesin family member 26B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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