Guide to the Human Genome
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Name: S100A7A Sequence: fasta or formatted (101aa) NCBI GI: 28827815
Description:

S100 calcium binding protein A7-like 1

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          7           2
 C cysteine            2.0          2           1
 D aspartate           7.9          8           1
 E glutamate           5.9          6           1
 F phenylalanine       5.9          6           1
 G glycine             7.9          8           2
 H histidine           4.0          4           1
 I isoleucine          6.9          7           2
 K lysine             11.9         12           2
 L leucine             6.9          7           2
 M methionine          5.0          5           2
 N asparagine          4.0          4           1
 P proline             3.0          3           1
 Q glutamine           3.0          3           1
 R arginine            2.0          2           1
 S serine              8.9          9           1
 T threonine           4.0          4           1
 V valine              1.0          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A7-like 1 
S100A7                0.924   S100 calcium binding protein A7 
S100A7L2              0.549   S100 calcium binding protein A7-like 2 
S100A11               0.163   S100 calcium binding protein A11 
S100B                 0.125   S100 calcium-binding protein, beta 
S100A12               0.120   S100 calcium-binding protein A12 
S100P                 0.114   S100 calcium binding protein P 
S100A9                0.103   S100 calcium-binding protein A9 
S100A6                0.103   S100 calcium-binding protein A6 
S100Z                 0.103   S100 calcium binding protein Z 
S100A4                0.098   S100 calcium-binding protein A4 
S100A4                0.098   S100 calcium-binding protein A4 
S100A10               0.098   S100 calcium binding protein A10 
S100A8                0.092   S100 calcium-binding protein A8 
S100A1                0.087   S100 calcium binding protein A1 
FLG2                  0.087   filaggrin family member 2 
S100A16               0.087   S100 calcium binding protein A16 
RPTN                  0.076   repetin 
S100A5                0.076   S100 calcium binding protein A5 
S100A2                0.071   S100 calcium binding protein A2 
S100G                 0.071   calbindin 3 
FLG                   0.054   filaggrin 
SNTN                  0.054   sentan, cilia apical structure protein 
HRNR                  0.049   hornerin 
S100A13               0.043   S100 calcium binding protein A13 
S100A13               0.043   S100 calcium binding protein A13 
S100A13               0.043   S100 calcium binding protein A13 
S100A13               0.043   S100 calcium binding protein A13 
S100A13               0.043   S100 calcium binding protein A13 
GUCA1B                0.027   guanylate cyclase activator 1B (retina) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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