Guide to the Human Genome
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Name: FLG2 Sequence: fasta or formatted (2391aa) NCBI GI: 62122917
Description:

filaggrin family member 2

Referenced in:

Calmodulin and Calcium
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.5         36           1
 C cysteine            1.0         24           2
 D aspartate           2.2         52           2
 E glutamate           4.9        116           3
 F phenylalanine       2.3         56           1
 G glycine            20.3        486           2
 H histidine          10.3        247           2
 I isoleucine          1.0         24           2
 K lysine              1.3         31           2
 L leucine             1.2         29           2
 M methionine          0.2          5           1
 N asparagine          1.0         24           1
 P proline             1.1         26           1
 Q glutamine          10.2        244           2
 R arginine            6.1        145           4
 S serine             22.5        537           4
 T threonine           8.0        191           2
 V valine              2.0         48           2
 W tryptophan          0.3          7           1
 Y tyrosine            2.6         63           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   filaggrin family member 2 
HRNR                  0.291   hornerin 
FLG                   0.157   filaggrin 
RPTN                  0.035   repetin 
DSPP                  0.035   dentin sialophosphoprotein preproprotein 
MUC12                 0.027   PREDICTED: mucin 12 
FUS                   0.025   fusion (involved in t(12;16) in malignant liposarcoma...
NUP214                0.023   nucleoporin 214kDa 
TAF15                 0.022   TBP-associated factor 15 isoform 1 
MUC12                 0.021   PREDICTED: mucin 12, cell surface associated 
TAF15                 0.021   TBP-associated factor 15 isoform 2 
LOC100286952          0.020   PREDICTED: hypothetical protein XP_002344252 
TRO                   0.020   trophinin isoform 5 
MUC12                 0.019   PREDICTED: mucin 12 
RBMXL3                0.018   RNA binding motif protein, X-linked-like 3 
CRNN                  0.018   cornulin 
LOC100292655          0.018   PREDICTED: similar to armadillo repeat containing, ...
LOC100132738          0.018   PREDICTED: similar to hCG1817845 
LOR                   0.016   loricrin 
ARID1B                0.016   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.015   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.015   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100291118          0.015   PREDICTED: hypothetical protein XP_002347351 
LOC100287737          0.015   PREDICTED: hypothetical protein XP_002343203 
DMKN                  0.014   dermokine isoform 5 precursor 
LOC100293409          0.014   PREDICTED: similar to Mucin-19 
LOC729792             0.014   PREDICTED: hypothetical protein 
LOC729792             0.014   PREDICTED: hypothetical protein 
LOC729792             0.014   PREDICTED: hypothetical protein 
LOC100294501          0.014   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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