Guide to the Human Genome
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Name: LOC100288534 Sequence: fasta or formatted (350aa) NCBI GI: 239745893
Description:

PREDICTED: hypothetical protein XP_002343611

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         29           2
 C cysteine            1.7          6           1
 D aspartate           4.0         14           1
 E glutamate           2.6          9           1
 F phenylalanine       5.7         20           1
 G glycine             9.4         33           3
 H histidine           2.3          8           1
 I isoleucine          1.1          4           1
 K lysine              5.1         18           1
 L leucine            12.3         43           2
 M methionine          2.9         10           1
 N asparagine          3.7         13           2
 P proline             8.9         31           2
 Q glutamine           5.1         18           1
 R arginine            4.3         15           2
 S serine              8.6         30           2
 T threonine           6.0         21           2
 V valine              6.3         22           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343611 
LOC731414             0.832   PREDICTED: similar to S100 calcium binding protein ...
LOC731414             0.832   PREDICTED: similar to S100 calcium binding protein ...
S100A10               0.170   S100 calcium binding protein A10 
S100A1                0.057   S100 calcium binding protein A1 
S100Z                 0.054   S100 calcium binding protein Z 
S100P                 0.044   S100 calcium binding protein P 
S100A11               0.041   S100 calcium binding protein A11 
S100B                 0.032   S100 calcium-binding protein, beta 
S100A4                0.031   S100 calcium-binding protein A4 
S100A4                0.031   S100 calcium-binding protein A4 
S100A12               0.026   S100 calcium-binding protein A12 
S100A9                0.023   S100 calcium-binding protein A9 
FLG2                  0.020   filaggrin family member 2 
S100A5                0.019   S100 calcium binding protein A5 
RPTN                  0.018   repetin 
S100A6                0.018   S100 calcium-binding protein A6 
HRNR                  0.015   hornerin 
WNK4                  0.010   WNK lysine deficient protein kinase 4 
DLAT                  0.010   dihydrolipoamide S-acetyltransferase 
ASXL3                 0.010   additional sex combs like 3 
FLG                   0.009   filaggrin 
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.007   bromodomain PHD finger transcription factor isoform ...
GOLGB1                0.007   golgi autoantigen, golgin subfamily b, macrogolgin ...
ZIC5                  0.007   zinc finger protein of the cerebellum 5 
FAM186A               0.007   family with sequence similarity 186, member A [Homo...
PSAP                  0.007   prosaposin isoform c preproprotein 
PSAP                  0.007   prosaposin isoform b preproprotein 
PSAP                  0.007   prosaposin isoform a preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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