Guide to the Human Genome
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Name: S100P Sequence: fasta or formatted (95aa) NCBI GI: 5174663
Description:

S100 calcium binding protein P

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4          8           2
 C cysteine            1.1          1           1
 D aspartate           8.4          8           1
 E glutamate           8.4          8           1
 F phenylalanine       6.3          6           1
 G glycine             8.4          8           1
 H histidine           1.1          1           1
 I isoleucine          4.2          4           2
 K lysine             10.5         10           1
 L leucine            10.5         10           2
 M methionine          4.2          4           1
 N asparagine          1.1          1           1
 P proline             1.1          1           1
 Q glutamine           3.2          3           1
 R arginine            1.1          1           1
 S serine              7.4          7           1
 T threonine           6.3          6           1
 V valine              6.3          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein P 
S100A1                0.475   S100 calcium binding protein A1 
S100B                 0.451   S100 calcium-binding protein, beta 
S100Z                 0.444   S100 calcium binding protein Z 
S100A2                0.352   S100 calcium binding protein A2 
S100A4                0.352   S100 calcium-binding protein A4 
S100A4                0.352   S100 calcium-binding protein A4 
S100A10               0.340   S100 calcium binding protein A10 
S100A12               0.333   S100 calcium-binding protein A12 
S100A11               0.327   S100 calcium binding protein A11 
FLG2                  0.327   filaggrin family member 2 
S100A9                0.265   S100 calcium-binding protein A9 
S100A5                0.253   S100 calcium binding protein A5 
S100A6                0.247   S100 calcium-binding protein A6 
S100A8                0.235   S100 calcium-binding protein A8 
CRNN                  0.235   cornulin 
HRNR                  0.228   hornerin 
FLG                   0.222   filaggrin 
RPTN                  0.204   repetin 
S100A3                0.204   S100 calcium binding protein A3 
TCHH                  0.198   trichohyalin 
S100G                 0.198   calbindin 3 
LOC731414             0.185   PREDICTED: similar to S100 calcium binding protein ...
LOC731414             0.185   PREDICTED: similar to S100 calcium binding protein ...
LOC100288534          0.185   PREDICTED: hypothetical protein XP_002343611 
S100A16               0.160   S100 calcium binding protein A16 
S100A13               0.154   S100 calcium binding protein A13 
S100A13               0.154   S100 calcium binding protein A13 
S100A13               0.154   S100 calcium binding protein A13 
S100A13               0.154   S100 calcium binding protein A13 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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