Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: S100A4 Sequence: fasta or formatted (101aa) NCBI GI: 9845516
Description:

S100 calcium-binding protein A4

Referenced in:

Calmodulin and Calcium
Protein Tyrosine Phosphatases

Other entries for this name:
alt mRNA [101aa] S100 calcium-binding protein A4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          5           2
 C cysteine            4.0          4           1
 D aspartate           6.9          7           1
 E glutamate           9.9         10           1
 F phenylalanine       8.9          9           2
 G glycine             4.0          4           1
 H histidine           1.0          1           1
 I isoleucine          1.0          1           1
 K lysine             11.9         12           2
 L leucine            10.9         11           2
 M methionine          5.0          5           2
 N asparagine          5.0          5           1
 P proline             4.0          4           1
 Q glutamine           3.0          3           1
 R arginine            4.0          4           1
 S serine              6.9          7           1
 T threonine           3.0          3           1
 V valine              4.0          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium-binding protein A4 
S100A4                1.000   S100 calcium-binding protein A4 
S100A2                0.565   S100 calcium binding protein A2 
S100A6                0.402   S100 calcium-binding protein A6 
S100A1                0.402   S100 calcium binding protein A1 
S100A5                0.370   S100 calcium binding protein A5 
S100B                 0.370   S100 calcium-binding protein, beta 
S100Z                 0.370   S100 calcium binding protein Z 
S100A3                0.370   S100 calcium binding protein A3 
S100P                 0.310   S100 calcium binding protein P 
S100A10               0.239   S100 calcium binding protein A10 
S100A11               0.223   S100 calcium binding protein A11 
S100A12               0.212   S100 calcium-binding protein A12 
S100A9                0.196   S100 calcium-binding protein A9 
S100A16               0.168   S100 calcium binding protein A16 
FLG2                  0.163   filaggrin family member 2 
S100A13               0.163   S100 calcium binding protein A13 
S100A13               0.163   S100 calcium binding protein A13 
S100A13               0.163   S100 calcium binding protein A13 
S100A13               0.163   S100 calcium binding protein A13 
S100A13               0.163   S100 calcium binding protein A13 
RPTN                  0.158   repetin 
S100G                 0.147   calbindin 3 
S100A8                0.147   S100 calcium-binding protein A8 
HRNR                  0.125   hornerin 
S100A14               0.114   S100 calcium binding protein A14 
LOC731414             0.114   PREDICTED: similar to S100 calcium binding protein ...
LOC731414             0.114   PREDICTED: similar to S100 calcium binding protein ...
LOC100288534          0.114   PREDICTED: hypothetical protein XP_002343611 
TCHH                  0.114   trichohyalin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press