Guide to the Human Genome
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Name: S100A16 Sequence: fasta or formatted (103aa) NCBI GI: 17933772
Description:

S100 calcium binding protein A16

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          5           2
 C cysteine            1.0          1           1
 D aspartate           5.8          6           1
 E glutamate           7.8          8           1
 F phenylalanine       2.9          3           1
 G glycine             4.9          5           2
 H histidine           2.9          3           1
 I isoleucine          7.8          8           1
 K lysine              9.7         10           1
 L leucine             9.7         10           1
 M methionine          2.9          3           1
 N asparagine          5.8          6           1
 P proline             1.0          1           1
 Q glutamine           4.9          5           2
 R arginine            2.9          3           1
 S serine             10.7         11           3
 T threonine           3.9          4           1
 V valine              4.9          5           1
 W tryptophan          1.0          1           1
 Y tyrosine            4.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium binding protein A16 
S100B                 0.192   S100 calcium-binding protein, beta 
S100A13               0.192   S100 calcium binding protein A13 
S100A13               0.192   S100 calcium binding protein A13 
S100A13               0.192   S100 calcium binding protein A13 
S100A13               0.192   S100 calcium binding protein A13 
S100A13               0.192   S100 calcium binding protein A13 
S100A4                0.170   S100 calcium-binding protein A4 
S100A4                0.170   S100 calcium-binding protein A4 
S100Z                 0.170   S100 calcium binding protein Z 
S100A1                0.165   S100 calcium binding protein A1 
FLG2                  0.154   filaggrin family member 2 
S100A2                0.143   S100 calcium binding protein A2 
S100P                 0.143   S100 calcium binding protein P 
S100A9                0.132   S100 calcium-binding protein A9 
HRNR                  0.126   hornerin 
S100A10               0.121   S100 calcium binding protein A10 
S100A11               0.121   S100 calcium binding protein A11 
S100A6                0.104   S100 calcium-binding protein A6 
S100A12               0.104   S100 calcium-binding protein A12 
S100A8                0.104   S100 calcium-binding protein A8 
S100A14               0.099   S100 calcium binding protein A14 
PPP3R1                0.093   protein phosphatase 3, regulatory subunit B, alpha is...
S100A7                0.093   S100 calcium binding protein A7 
FLG                   0.093   filaggrin 
S100A5                0.093   S100 calcium binding protein A5 
S100A7A               0.088   S100 calcium binding protein A7-like 1 
S100G                 0.066   calbindin 3 
TCHH                  0.060   trichohyalin 
S100A3                0.060   S100 calcium binding protein A3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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