Guide to the Human Genome
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Name: CRNN Sequence: fasta or formatted (495aa) NCBI GI: 7706635
Description:

cornulin

Referenced in:

Calmodulin and Calcium
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         32           2
 C cysteine            0.8          4           1
 D aspartate           3.2         16           2
 E glutamate           8.9         44           2
 F phenylalanine       1.2          6           1
 G glycine            11.7         58           2
 H histidine           3.6         18           1
 I isoleucine          2.2         11           2
 K lysine              2.2         11           1
 L leucine             4.0         20           2
 M methionine          0.6          3           1
 N asparagine          2.2         11           1
 P proline             2.8         14           1
 Q glutamine          14.1         70           2
 R arginine            7.1         35           2
 S serine              9.7         48           2
 T threonine          11.9         59           2
 V valine              5.3         26           2
 W tryptophan          0.8          4           1
 Y tyrosine            1.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cornulin 
RPTN                  0.107   repetin 
HRNR                  0.096   hornerin 
FLG2                  0.094   filaggrin family member 2 
TCHH                  0.081   trichohyalin 
FLG                   0.081   filaggrin 
TCHHL1                0.059   trichohyalin-like 1 
RPGR                  0.041   retinitis pigmentosa GTPase regulator isoform C [Hom...
RP1L1                 0.040   retinitis pigmentosa 1-like 1 
S100P                 0.039   S100 calcium binding protein P 
S100A12               0.036   S100 calcium-binding protein A12 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC729792             0.033   PREDICTED: hypothetical protein 
LOC100294501          0.033   PREDICTED: hypothetical protein 
LOC100294249          0.033   PREDICTED: hypothetical protein XP_002344067 
LOC100294238          0.033   PREDICTED: hypothetical protein 
LOC100294204          0.033   PREDICTED: hypothetical protein 
LOC100294136          0.033   PREDICTED: hypothetical protein 
LOC100294091          0.033   PREDICTED: hypothetical protein 
LOC730401             0.033   PREDICTED: hypothetical protein 
APOB48R               0.033   apolipoprotein B48 receptor 
S100B                 0.030   S100 calcium-binding protein, beta 
S100A1                0.028   S100 calcium binding protein A1 
S100A8                0.028   S100 calcium-binding protein A8 
DMP1                  0.028   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.028   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
BSN                   0.028   bassoon protein 
MUC21                 0.028   mucin 21 
S100G                 0.028   calbindin 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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