Guide to the Human Genome
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Name: S100A12 Sequence: fasta or formatted (92aa) NCBI GI: 5032059
Description:

S100 calcium-binding protein A12

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6          7           2
 C cysteine            0.0          0           0
 D aspartate           6.5          6           1
 E glutamate           9.8          9           2
 F phenylalanine       5.4          5           1
 G glycine             4.3          4           1
 H histidine           6.5          6           1
 I isoleucine          8.7          8           1
 K lysine             10.9         10           1
 L leucine            10.9         10           2
 M methionine          1.1          1           1
 N asparagine          4.3          4           1
 P proline             0.0          0           0
 Q glutamine           6.5          6           1
 R arginine            1.1          1           1
 S serine              3.3          3           1
 T threonine           5.4          5           1
 V valine              5.4          5           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   S100 calcium-binding protein A12 
S100A9                0.390   S100 calcium-binding protein A9 
S100P                 0.340   S100 calcium binding protein P 
S100B                 0.327   S100 calcium-binding protein, beta 
S100Z                 0.283   S100 calcium binding protein Z 
FLG                   0.277   filaggrin 
HRNR                  0.264   hornerin 
S100A1                0.264   S100 calcium binding protein A1 
S100A11               0.252   S100 calcium binding protein A11 
FLG2                  0.252   filaggrin family member 2 
S100A4                0.245   S100 calcium-binding protein A4 
S100A4                0.245   S100 calcium-binding protein A4 
S100A8                0.245   S100 calcium-binding protein A8 
S100A2                0.245   S100 calcium binding protein A2 
S100A6                0.220   S100 calcium-binding protein A6 
CRNN                  0.220   cornulin 
S100A5                0.214   S100 calcium binding protein A5 
S100A13               0.201   S100 calcium binding protein A13 
S100A13               0.201   S100 calcium binding protein A13 
S100A13               0.201   S100 calcium binding protein A13 
S100A13               0.201   S100 calcium binding protein A13 
S100A13               0.201   S100 calcium binding protein A13 
RPTN                  0.182   repetin 
S100A10               0.176   S100 calcium binding protein A10 
S100G                 0.157   calbindin 3 
S100A7                0.138   S100 calcium binding protein A7 
S100A7A               0.138   S100 calcium binding protein A7-like 1 
TCHH                  0.126   trichohyalin 
S100A3                0.126   S100 calcium binding protein A3 
S100A16               0.119   S100 calcium binding protein A16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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