Guide to the Human Genome
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Name: S100G Sequence: fasta or formatted (79aa) NCBI GI: 4757898
Description:

calbindin 3

Referenced in:

Calmodulin and Calcium

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.8          3           2
 C cysteine            0.0          0           0
 D aspartate           8.9          7           2
 E glutamate          12.7         10           2
 F phenylalanine       6.3          5           1
 G glycine             5.1          4           1
 H histidine           0.0          0           0
 I isoleucine          3.8          3           1
 K lysine             13.9         11           2
 L leucine            13.9         11           2
 M methionine          1.3          1           1
 N asparagine          2.5          2           1
 P proline             5.1          4           1
 Q glutamine           6.3          5           1
 R arginine            1.3          1           1
 S serine              7.6          6           1
 T threonine           2.5          2           1
 V valine              3.8          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.3          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calbindin 3 
S100A1                0.280   S100 calcium binding protein A1 
S100P                 0.242   S100 calcium binding protein P 
S100Z                 0.235   S100 calcium binding protein Z 
HRNR                  0.220   hornerin 
RPTN                  0.212   repetin 
S100B                 0.205   S100 calcium-binding protein, beta 
S100A4                0.205   S100 calcium-binding protein A4 
S100A4                0.205   S100 calcium-binding protein A4 
CRNN                  0.205   cornulin 
S100A9                0.189   S100 calcium-binding protein A9 
S100A12               0.189   S100 calcium-binding protein A12 
S100A13               0.189   S100 calcium binding protein A13 
S100A13               0.189   S100 calcium binding protein A13 
S100A13               0.189   S100 calcium binding protein A13 
S100A13               0.189   S100 calcium binding protein A13 
S100A13               0.189   S100 calcium binding protein A13 
FLG                   0.189   filaggrin 
S100A11               0.189   S100 calcium binding protein A11 
S100A5                0.189   S100 calcium binding protein A5 
TCHH                  0.174   trichohyalin 
S100A6                0.174   S100 calcium-binding protein A6 
S100A8                0.167   S100 calcium-binding protein A8 
FLG2                  0.167   filaggrin family member 2 
S100A2                0.167   S100 calcium binding protein A2 
S100A10               0.159   S100 calcium binding protein A10 
S100A7                0.136   S100 calcium binding protein A7 
TNNC1                 0.121   troponin C, slow 
NINL                  0.114   ninein-like 
CABP4                 0.098   calcium binding protein 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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