Guide to the Human Genome
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Name: RPTN Sequence: fasta or formatted (784aa) NCBI GI: 171916097
Description:

repetin

Referenced in:

Calmodulin and Calcium
Skin and Related Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.7         13           1
 C cysteine            1.4         11           1
 D aspartate           7.8         61           1
 E glutamate           5.6         44           3
 F phenylalanine       1.5         12           1
 G glycine            10.5         82           2
 H histidine           8.4         66           2
 I isoleucine          1.4         11           1
 K lysine              3.1         24           2
 L leucine             3.4         27           3
 M methionine          0.5          4           1
 N asparagine          2.6         20           1
 P proline             2.3         18           1
 Q glutamine          19.4        152           2
 R arginine            8.0         63           2
 S serine             11.7         92           3
 T threonine           4.3         34           1
 V valine              1.0          8           1
 W tryptophan          0.6          5           1
 Y tyrosine            4.7         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   repetin 
FLG2                  0.107   filaggrin family member 2 
HRNR                  0.106   hornerin 
FLG                   0.091   filaggrin 
TCHH                  0.088   trichohyalin 
CRNN                  0.063   cornulin 
TCHHL1                0.037   trichohyalin-like 1 
C2orf16               0.036   hypothetical protein LOC84226 
DSPP                  0.034   dentin sialophosphoprotein preproprotein 
LOC100286959          0.032   PREDICTED: hypothetical protein XP_002343921 
CATSPER1              0.030   sperm-associated cation channel 1 
TAF15                 0.030   TBP-associated factor 15 isoform 1 
FUS                   0.030   fusion (involved in t(12;16) in malignant liposarcoma...
ZC3H13                0.030   zinc finger CCCH-type containing 13 
RBMXL3                0.029   RNA binding motif protein, X-linked-like 3 
TAF15                 0.029   TBP-associated factor 15 isoform 2 
RPGR                  0.028   retinitis pigmentosa GTPase regulator isoform C [Hom...
LOC100170229          0.026   hypothetical protein LOC100170229 
S100B                 0.026   S100 calcium-binding protein, beta 
IVL                   0.025   involucrin 
HRC                   0.025   histidine rich calcium binding protein precursor [Hom...
S100A1                0.024   S100 calcium binding protein A1 
SS18L1                0.023   SS18-like protein 1 
COL24A1               0.022   collagen, type XXIV, alpha 1 
RP1L1                 0.021   retinitis pigmentosa 1-like 1 
COL29A1               0.020   collagen, type XXIX, alpha 1 
SS18                  0.020   synovial sarcoma translocation, chromosome 18 isofor...
S100P                 0.020   S100 calcium binding protein P 
CHGB                  0.020   chromogranin B precursor 
LOC100133758          0.019   PREDICTED: hypothetical protein, partial 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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