RPTN 9567

Name: RPTN	Sequence: fasta or formatted (784aa)		NCBI GI: 171916097
Description: repetin		Referenced in: Calmodulin and Calcium Skin and Related Tissues
Composition: Amino acid Percentage Count Longest homopolymer A alanine 1.7 13 1 C cysteine 1.4 11 1 D aspartate 7.8 61 1 E glutamate 5.6 44 3 F phenylalanine 1.5 12 1 G glycine 10.5 82 2 H histidine 8.4 66 2 I isoleucine 1.4 11 1 K lysine 3.1 24 2 L leucine 3.4 27 3 M methionine 0.5 4 1 N asparagine 2.6 20 1 P proline 2.3 18 1 Q glutamine 19.4 152 2 R arginine 8.0 63 2 S serine 11.7 92 3 T threonine 4.3 34 1 V valine 1.0 8 1 W tryptophan 0.6 5 1 Y tyrosine 4.7 37 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 repetin FLG2 0.107 filaggrin family member 2 HRNR 0.106 hornerin FLG 0.091 filaggrin TCHH 0.088 trichohyalin CRNN 0.063 cornulin TCHHL1 0.037 trichohyalin-like 1 C2orf16 0.036 hypothetical protein LOC84226 DSPP 0.034 dentin sialophosphoprotein preproprotein LOC100286959 0.032 PREDICTED: hypothetical protein XP_002343921 CATSPER1 0.030 sperm-associated cation channel 1 TAF15 0.030 TBP-associated factor 15 isoform 1 FUS 0.030 fusion (involved in t(12;16) in malignant liposarcoma... ZC3H13 0.030 zinc finger CCCH-type containing 13 RBMXL3 0.029 RNA binding motif protein, X-linked-like 3 TAF15 0.029 TBP-associated factor 15 isoform 2 RPGR 0.028 retinitis pigmentosa GTPase regulator isoform C [Hom... LOC100170229 0.026 hypothetical protein LOC100170229 S100B 0.026 S100 calcium-binding protein, beta IVL 0.025 involucrin HRC 0.025 histidine rich calcium binding protein precursor [Hom... S100A1 0.024 S100 calcium binding protein A1 SS18L1 0.023 SS18-like protein 1 COL24A1 0.022 collagen, type XXIV, alpha 1 RP1L1 0.021 retinitis pigmentosa 1-like 1 COL29A1 0.020 collagen, type XXIX, alpha 1 SS18 0.020 synovial sarcoma translocation, chromosome 18 isofor... S100P 0.020 S100 calcium binding protein P CHGB 0.020 chromogranin B precursor LOC100133758 0.019 PREDICTED: hypothetical protein, partial Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.