Guide to the Human Genome
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Name: LOC731414 Sequence: fasta or formatted (370aa) NCBI GI: 239756890
Description:

PREDICTED: similar to S100 calcium binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))

Not currently referenced in the text

Other entries for this name:
alt mRNA {370aa} PREDICTED: similar to S100 calcium binding protein A10 (annexin I...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         37           4
 C cysteine            1.6          6           1
 D aspartate           3.2         12           1
 E glutamate           3.5         13           2
 F phenylalanine       5.4         20           1
 G glycine             8.4         31           3
 H histidine           1.6          6           1
 I isoleucine          1.6          6           1
 K lysine              4.6         17           1
 L leucine            12.7         47           2
 M methionine          2.7         10           1
 N asparagine          4.1         15           2
 P proline             9.2         34           2
 Q glutamine           3.5         13           1
 R arginine            5.7         21           2
 S serine              8.6         32           2
 T threonine           5.9         22           2
 V valine              6.2         23           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to S100 calcium binding protein ... 
LOC731414             1.000   PREDICTED: similar to S100 calcium binding protein ...
LOC100288534          0.796   PREDICTED: hypothetical protein XP_002343611 
S100A10               0.162   S100 calcium binding protein A10 
S100A1                0.055   S100 calcium binding protein A1 
S100Z                 0.052   S100 calcium binding protein Z 
S100P                 0.042   S100 calcium binding protein P 
S100A11               0.039   S100 calcium binding protein A11 
S100B                 0.031   S100 calcium-binding protein, beta 
S100A4                0.029   S100 calcium-binding protein A4 
S100A4                0.029   S100 calcium-binding protein A4 
S100A12               0.025   S100 calcium-binding protein A12 
S100A9                0.022   S100 calcium-binding protein A9 
FLG2                  0.020   filaggrin family member 2 
S100A5                0.018   S100 calcium binding protein A5 
RPTN                  0.017   repetin 
S100A6                0.017   S100 calcium-binding protein A6 
HRNR                  0.014   hornerin 
WNK4                  0.010   WNK lysine deficient protein kinase 4 
USP8                  0.010   ubiquitin specific peptidase 8 
USP8                  0.010   ubiquitin specific peptidase 8 
USP8                  0.010   ubiquitin specific peptidase 8 
ASXL3                 0.010   additional sex combs like 3 
CASKIN2               0.008   cask-interacting protein 2 isoform b 
CASKIN2               0.008   cask-interacting protein 2 isoform a 
FLG                   0.008   filaggrin 
TYSND1                0.008   trypsin domain containing 1 isoform b 
TYSND1                0.008   trypsin domain containing 1 isoform a 
KDM3A                 0.007   jumonji domain containing 1A 
KDM3A                 0.007   jumonji domain containing 1A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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