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Search of human proteins with 130977756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|130977756 transmembrane anterior posterior transformation 1
[Homo sapiens]
(567 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|130977756 transmembrane anterior posterior transformation 1 [... 1132 0.0
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 40 0.007
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 40 0.007
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 40 0.007
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 40 0.007
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 37 0.037
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 37 0.037
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 37 0.037
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 37 0.037
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 37 0.037
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 37 0.048
gi|9966841 cell death regulator aven [Homo sapiens] 37 0.048
gi|87162461 fragile X mental retardation 2 [Homo sapiens] 37 0.048
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 37 0.048
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 37 0.048
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 37 0.063
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 36 0.083
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 36 0.083
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 36 0.083
gi|4503119 cancer/testis antigen 1B [Homo sapiens] 36 0.083
gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens] 36 0.083
gi|21281685 cancer/testis antigen 1A [Homo sapiens] 36 0.083
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 36 0.11
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 35 0.14
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 35 0.14
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 35 0.14
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.18
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.18
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.18
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens] 35 0.18
>gi|130977756 transmembrane anterior posterior transformation 1
[Homo sapiens]
Length = 567
Score = 1132 bits (2927), Expect = 0.0
Identities = 567/567 (100%), Positives = 567/567 (100%)
Query: 1 MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRE 60
MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRE
Sbjct: 1 MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRE 60
Query: 61 RRRGRTELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCL 120
RRRGRTELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCL
Sbjct: 61 RRRGRTELSLLRFLSAELTRGYFLEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCL 120
Query: 121 DAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVD 180
DAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVD
Sbjct: 121 DAFLYVFTLLPLRVFLALFRLLTLPCYGLRDRRLLQPAQVCDILKGVILVICYFMMHYVD 180
Query: 181 YSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIP 240
YSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIP
Sbjct: 181 YSMMYHLIRGQSVIKLYIIYNMLEVADRLFSSFGQDILDALYWTATEPKERKRAHIGVIP 240
Query: 241 HFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLF 300
HFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLF
Sbjct: 241 HFFMAVLYVFLHAILIMVQATTLNVAFNSHNKSLLTIMMSNNFVEIKGSVFKKFEKNNLF 300
Query: 301 QMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFI 360
QMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFI
Sbjct: 301 QMSNSDIKERFTNYVLLLIVCLRNMEQFSWNPDHLWVLFPDVCMVIASEIAVDIVKHAFI 360
Query: 361 TKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSS 420
TKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSS
Sbjct: 361 TKFNDITADVYSEYRASLAFDLVSSRQKNAYTDYSDSVARRMGFIPLPLAVLLIRVVTSS 420
Query: 421 IKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKEAKMEEKLSNPPATCTPGKPS 480
IKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKEAKMEEKLSNPPATCTPGKPS
Sbjct: 421 IKVQGILSYACVILFYFGLISLKVLNSIVLLGKSCQYVKEAKMEEKLSNPPATCTPGKPS 480
Query: 481 SKSQNKCKPSQGLSTEENLSASITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQD 540
SKSQNKCKPSQGLSTEENLSASITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQD
Sbjct: 481 SKSQNKCKPSQGLSTEENLSASITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQD 540
Query: 541 NSELKHRSSKKDLLEIDRFTICGNRID 567
NSELKHRSSKKDLLEIDRFTICGNRID
Sbjct: 541 NSELKHRSSKKDLLEIDRFTICGNRID 567
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/51 (45%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 3 GVGDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
G GDA APGE G G+ G R G G GG G GPP P T G
Sbjct: 673 GKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPG 723
Score = 35.4 bits (80), Expect = 0.14
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
G A G G GV GP+ D G+ + G G QGPP AP
Sbjct: 906 GPAGNTGAPGSPGVSGPKGDA-GQPGEKGSPGAQGPPGAP 944
Score = 34.3 bits (77), Expect = 0.31
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 7/39 (17%)
Query: 3 GVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G G+ APGE G GG G A PGGSG GPP
Sbjct: 823 GKGERGAPGEKGEGGPPGV-------AGPPGGSGPAGPP 854
Score = 33.9 bits (76), Expect = 0.41
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 5 GDAAAPGEGGGGGVDG-PQRDG-------RGEAEQPGGSGGQGPPPAP 44
G A PG G G DG P RDG RGE PG G G P P
Sbjct: 1005 GTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPP 1052
Score = 33.1 bits (74), Expect = 0.70
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
G PGE G G GP +G+A PG GG+G AP
Sbjct: 645 GTGGPPGENGKPGEPGP----KGDAGAPGAPGGKGDAGAP 680
Score = 32.7 bits (73), Expect = 0.91
Identities = 20/48 (41%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 5 GDAAAPGEGGGGGVDG-PQRDG-------RGEAEQPGGSGGQGPPPAP 44
G+ APG G G G P RDG RG PGG G G P P
Sbjct: 507 GERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPP 554
Score = 31.6 bits (70), Expect = 2.0
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
VG A +PG G G RGE G +G QGPP P + + G
Sbjct: 353 VGPAGSPGSNGAPGQ-------RGEPGPQGHAGAQGPPGPPGINGSPG 393
Score = 31.6 bits (70), Expect = 2.0
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
G A PG G G GPQ +GE PGG G G P A
Sbjct: 840 GVAGPPGGSGPAGPPGPQ-GVKGERGSPGGPGAAGFPGA 877
Score = 31.6 bits (70), Expect = 2.0
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 11/52 (21%)
Query: 4 VGDAAAPGEGGGGGVDGP-----------QRDGRGEAEQPGGSGGQGPPPAP 44
VG + PG+ G G GP +R G PG G GPP AP
Sbjct: 1142 VGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAP 1193
Score = 31.2 bits (69), Expect = 2.7
Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQG 39
G A PG+ G G GP R RGEA PG G +G
Sbjct: 429 GGAGEPGKNGAKGEPGP-RGERGEAGIPGVPGAKG 462
Score = 31.2 bits (69), Expect = 2.7
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 10 PGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
PGE GG G GP +G+ +PGG G G P
Sbjct: 728 PGERGGLGSPGP----KGDKGEPGGPGADGVP 755
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQG 39
G A APG G G GPQ R +GE + G +G +G
Sbjct: 1071 GPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKG 1107
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 3 GVGDAAAPGEGGGGGVDG-PQRDG-RGEAEQPGGSGGQGPPPAP 44
G G PG GG G DG P G +GE+ +PG G GP P
Sbjct: 532 GPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQP 575
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
G A PG G G GP G PG G QGPP P
Sbjct: 168 GLAGYPGPAGPPGPPGPPGTS-GHPGSPGSPGYQGPPGEP 206
Score = 29.6 bits (65), Expect = 7.7
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPG--------------GSGGQGPPPAP 44
G+ PGE G G GP R GE +PG GS GQ PP P
Sbjct: 285 GENGLPGENGAPGPMGP-RGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGP 337
Score = 29.6 bits (65), Expect = 7.7
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 5 GDAAAPGEGGGGGVDGPQ-RDG----RGEAEQPGGSGGQGPP 41
G + G+ G G GP+ DG GE PGG G QGPP
Sbjct: 567 GPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPP 608
Score = 29.6 bits (65), Expect = 7.7
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 5 GDAAAPGEGGGGGVDG-PQRDGR----------GEAEQPGGSGGQGPPPAPQLTETLG 51
G GE GG G DG P +DG G A QPG G G P P + G
Sbjct: 738 GPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRG 795
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 39.7 bits (91), Expect = 0.007
Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP-----PPAP 44
GD PGEGG G DG + D RGE +PG G GP PP P
Sbjct: 1187 GDPGPPGEGGPRGQDGAKGD-RGEDGEPGQPGSPGPTGENGPPGP 1230
Score = 33.9 bits (76), Expect = 0.41
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGP 40
G++ +PG G GV GP +R +GE+ QPG G GP
Sbjct: 1130 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGP 1167
Score = 31.2 bits (69), Expect = 2.7
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 5 GDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQGPP-----PAPQ 45
G PG G G+DGPQ + G +PG G QG P P PQ
Sbjct: 530 GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQ 577
Score = 30.4 bits (67), Expect = 4.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
G A +PGE G G GP PG G QGPP A
Sbjct: 926 GPAGSPGERGAAGSGGP-------IGPPGRPGPQGPPGA 957
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDG--RGEAEQPGGSGGQGPPPAPQLTETLG 51
+G GE G G+ GPQ +GE PG SG GP P L G
Sbjct: 1333 IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1382
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 39.7 bits (91), Expect = 0.007
Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP-----PPAP 44
GD PGEGG G DG + D RGE +PG G GP PP P
Sbjct: 1166 GDPGPPGEGGPRGQDGAKGD-RGEDGEPGQPGSPGPTGENGPPGP 1209
Score = 33.9 bits (76), Expect = 0.41
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGP 40
G++ +PG G GV GP +R +GE+ QPG G GP
Sbjct: 1109 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGP 1146
Score = 31.2 bits (69), Expect = 2.7
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 5 GDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQGPP-----PAPQ 45
G PG G G+DGPQ + G +PG G QG P P PQ
Sbjct: 509 GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQ 556
Score = 30.4 bits (67), Expect = 4.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
G A +PGE G G GP PG G QGPP A
Sbjct: 905 GPAGSPGERGAAGSGGP-------IGPPGRPGPQGPPGA 936
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDG--RGEAEQPGGSGGQGPPPAPQLTETLG 51
+G GE G G+ GPQ +GE PG SG GP P L G
Sbjct: 1312 IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1361
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 39.7 bits (91), Expect = 0.007
Identities = 22/45 (48%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP-----PPAP 44
GD PGEGG G DG + D RGE +PG G GP PP P
Sbjct: 1273 GDPGPPGEGGPRGQDGAKGD-RGEDGEPGQPGSPGPTGENGPPGP 1316
Score = 33.9 bits (76), Expect = 0.41
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGP 40
G++ +PG G GV GP +R +GE+ QPG G GP
Sbjct: 1216 GESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGP 1253
Score = 31.2 bits (69), Expect = 2.7
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 5 GDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQGPP-----PAPQ 45
G PG G G+DGPQ + G +PG G QG P P PQ
Sbjct: 616 GPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLPGPQ 663
Score = 30.4 bits (67), Expect = 4.5
Identities = 17/39 (43%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
G A +PGE G G GP PG G QGPP A
Sbjct: 1012 GPAGSPGERGAAGSGGP-------IGPPGRPGPQGPPGA 1043
Score = 30.4 bits (67), Expect = 4.5
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDG--RGEAEQPGGSGGQGPPPAPQLTETLG 51
+G GE G G+ GPQ +GE PG SG GP P L G
Sbjct: 1419 IGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAG 1468
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 37.4 bits (85), Expect = 0.037
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
GD PGE G G DGP D +G+ +PG +G GP P
Sbjct: 1345 GDPGPPGEPGPAGQDGPPGD-KGDDGEPGQTGSPGPTGEP 1383
Score = 35.8 bits (81), Expect = 0.11
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G+A PG G GG GP+ + RGE + G SG GPP
Sbjct: 1288 GEAGEPGLPGEGGPPGPKGE-RGEKGESGPSGAAGPP 1323
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G PG G G DGP G+ PG GGQGPP
Sbjct: 745 GPLGKPGLPGMPGADGPPGHP-GKEGPPGEKGGQGPP 780
Score = 30.4 bits (67), Expect = 4.5
Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQ--PGGSGGQGPPPAPQL 46
+G GE G G+ GPQ + EQ G SG GPP P L
Sbjct: 1491 IGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGPPGL 1535
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 37.4 bits (85), Expect = 0.037
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 10 PGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP----PAPQLTETLGFYESDRRRERRRGR 65
PG G G+DGP RG+ QPG G QGPP P+ + L + ++ RRG+
Sbjct: 779 PGTPGNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGK 834
Query: 66 T 66
T
Sbjct: 835 T 835
Score = 33.1 bits (74), Expect = 0.70
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
GD +PG G G GP G G +PG G QG P AP
Sbjct: 599 GDPGSPGSPGPAGPAGPP--GYGPQGEPGLQGTQGVPGAP 636
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 37.4 bits (85), Expect = 0.037
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 10 PGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP----PAPQLTETLGFYESDRRRERRRGR 65
PG G G+DGP RG+ QPG G QGPP P+ + L + ++ RRG+
Sbjct: 779 PGTPGNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGK 834
Query: 66 T 66
T
Sbjct: 835 T 835
Score = 33.1 bits (74), Expect = 0.70
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
GD +PG G G GP G G +PG G QG P AP
Sbjct: 599 GDPGSPGSPGPAGPAGPP--GYGPQGEPGLQGTQGVPGAP 636
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 37.4 bits (85), Expect = 0.037
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 10 PGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP----PAPQLTETLGFYESDRRRERRRGR 65
PG G G+DGP RG+ QPG G QGPP P+ + L + ++ RRG+
Sbjct: 779 PGTPGNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGK 834
Query: 66 T 66
T
Sbjct: 835 T 835
Score = 33.1 bits (74), Expect = 0.70
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
GD +PG G G GP G G +PG G QG P AP
Sbjct: 599 GDPGSPGSPGPAGPAGPP--GYGPQGEPGLQGTQGVPGAP 636
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 37.4 bits (85), Expect = 0.037
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 8/61 (13%)
Query: 10 PGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP----PAPQLTETLGFYESDRRRERRRGR 65
PG G G+DGP RG+ QPG G QGPP P+ + L + ++ RRG+
Sbjct: 779 PGTPGNEGLDGP----RGDPGQPGPPGEQGPPGRCIEGPRGAQGLPGLNGLKGQQGRRGK 834
Query: 66 T 66
T
Sbjct: 835 T 835
Score = 33.1 bits (74), Expect = 0.70
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
GD +PG G G GP G G +PG G QG P AP
Sbjct: 599 GDPGSPGSPGPAGPAGPP--GYGPQGEPGLQGTQGVPGAP 636
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 37.0 bits (84), Expect = 0.048
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 21/62 (33%)
Query: 4 VGDAAAPGEGGGGGVDG------------------PQRDGRGE---AEQPGGSGGQGPPP 42
+G+ GEGGGGG +G P R RG+ A+Q GGSGG+G P
Sbjct: 157 LGEPPPLGEGGGGGGEGGGAGGGSGEREGGAPQPPPPRGWRGKGVRAQQRGGSGGEGASP 216
Query: 43 AP 44
+P
Sbjct: 217 SP 218
>gi|9966841 cell death regulator aven [Homo sapiens]
Length = 362
Score = 37.0 bits (84), Expect = 0.048
Identities = 21/43 (48%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 3 GVGDAAAPGEGGGGGVDGPQRDGRGEAE----QPGGSGGQGPP 41
G A A G GGGGG DG R GRG GG GG G P
Sbjct: 30 GAAAAVARGGGGGGGGDGGGRRGRGRGRGFRGARGGRGGGGAP 72
>gi|87162461 fragile X mental retardation 2 [Homo sapiens]
Length = 1311
Score = 37.0 bits (84), Expect = 0.048
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 27/197 (13%)
Query: 388 KNAYTDYSDSV-----ARRMGFIPLPLAVLLIRVVTSSIKVQGILSYACVILFYFGLISL 442
K+ YT YS++V A R+ PLA + K +L Y C+ L Y + L
Sbjct: 1121 KSPYTMYSETVELLRYAMRLKNFASPLA-------SDGDKKLAVLCYRCLSLLYLRMFKL 1173
Query: 443 KVLNSIVLLGKSCQYVKE-AKMEEKLSNPPATCTPGKPSSKSQNKCKPSQGLSTEENLSA 501
K +++ +Y K+ A ++ +P + PS S N P + N
Sbjct: 1174 KKDHAMKYSRSLMEYFKQNASKVAQIPSPWVSNGKNTPSPVSLNNVSPINAMGNCNNGPV 1233
Query: 502 SITKQPIHQKENIIPLLVTSNSDQFLTTPDGDEKDITQDNSE-----------LKHRSSK 550
+I ++ H + + +TSN + D +K +T++N E L SS
Sbjct: 1234 TIPQRIHHMAASHVN--ITSNVLRGYEHWDMADK-LTRENKEFFGDLDTLMGPLTQHSSM 1290
Query: 551 KDLLEIDRFTICGNRID 567
+L+ R +C RID
Sbjct: 1291 TNLVRYVRQGLCWLRID 1307
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 37.0 bits (84), Expect = 0.048
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTET 49
GD G GGGGG G G GG GG PPAPQ T
Sbjct: 225 GDGGGAGGGGGGGGSG------GGGSGGGGGGGSSRPPAPQENTT 263
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 37.0 bits (84), Expect = 0.048
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTET 49
GD G GGGGG G G GG GG PPAPQ T
Sbjct: 209 GDGGGAGGGGGGGGSG------GGGSGGGGGGGSSRPPAPQENTT 247
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 36.6 bits (83), Expect = 0.063
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 13/113 (11%)
Query: 13 GGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRERRRGRTELSLLR 72
GGG G DG G PGG +GP P + L + RR RRR + +
Sbjct: 27 GGGAGPDGAGPGG------PGGGQARGPEPGEPGRKDLQHLSREERRRRRR-----ATAK 75
Query: 73 FLSAELTRGYF-LEHNEAKYTERRERVYTCLRIPRELEKLMVFGIFLCLDAFL 124
+ +A TR +E + E R+ + T L ++L K+ + + +C ++L
Sbjct: 76 YRTAHATRERIRVEAFNLAFAELRKLLPT-LPPDKKLSKIEILRLAICYISYL 127
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 36.2 bits (82), Expect = 0.083
Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 10/116 (8%)
Query: 3 GVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRERR 62
G G A G G GGG +G DG G GG GG G P + + E D
Sbjct: 728 GFGGPAVSGAGDGGGEEGGGGDGGGGGGDGGGGGGGGGGPYEKNDKN---QEKDESTPVS 784
Query: 63 RGRTELSLLRFLSAELTRGY-------FLEHNEAKYTERRERVYTCLRIPRELEKL 111
R L++L + L Y L + ++ RE CL +L+K+
Sbjct: 785 NHRLALTMLIKIVKSLGCAYGCGEGHRGLSGDRLRHQVFRENAQNCLTKLYKLDKM 840
Score = 30.0 bits (66), Expect = 5.9
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Query: 1 MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP 40
++G GD EGGGG G DG G GG GG GP
Sbjct: 734 VSGAGDGGGE-EGGGGDGGGGGGDGGG-----GGGGGGGP 767
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 36.2 bits (82), Expect = 0.083
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
GD PGE G G+ GP +R GE PG G QGP P T G
Sbjct: 681 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 729
Score = 35.8 bits (81), Expect = 0.11
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 5 GDAAAPGEGGGGGVDGPQ-RDG-------RGEAEQPGGSGGQGPPPAP 44
G A PG G G DGP RDG RGE G G GPP +P
Sbjct: 1029 GPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1076
Score = 35.0 bits (79), Expect = 0.18
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
GDA APG G G GPQ G G G QGPP A
Sbjct: 858 GDAGAPGPQGPSGAPGPQ-GPTGVTGPKGARGAQGPPGA 895
Score = 32.7 bits (73), Expect = 0.91
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPP 41
GD+ PG G G+ GP +GE G SG +GPP
Sbjct: 933 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPP 971
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
VG + APGE G G GPQ G QPG G GP A
Sbjct: 575 VGPSGAPGEDGRPGPPGPQ----GARGQPGVMGFPGPKGA 610
Score = 31.6 bits (70), Expect = 2.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
G+ PG G G G + RGE PG +G GPP A
Sbjct: 804 GEVGPPGPAGSAGARGAPGE-RGETGPPGPAGFAGPPGA 841
Score = 30.8 bits (68), Expect = 3.5
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 1 MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP--PPAP 44
M +G PG G G G Q + GE +PG SG GP PP P
Sbjct: 203 MGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMGPRGPPGP 247
Score = 30.8 bits (68), Expect = 3.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPP 41
G PG G G GP + RG +PGG G GPP
Sbjct: 468 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPP 506
Score = 30.8 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 10 PGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
PGE G G+ GP+ D RG+ + G G G LT +G
Sbjct: 752 PGERGAAGIAGPKGD-RGDVGEKGPEGAPGKDGGRGLTGPIG 792
Score = 30.4 bits (67), Expect = 4.5
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDG-----------RGEAEQPGGSGGQGPPPAP 44
VG PG G G GP+ D RG +PG G GPP P
Sbjct: 116 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPP 167
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 5 GDAAAPGEGGGGGVDGP--------QRDGRGEAEQPGGSGGQGPPPAP 44
G APG+ GG G+ GP +GE PG +G G AP
Sbjct: 774 GPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAP 821
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 10 PGEGGGGGVDGP-----------QRDGRGEAEQPGGSGGQGPP 41
PGE G GV GP + GEA +PG +G +GPP
Sbjct: 227 PGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 269
Score = 29.6 bits (65), Expect = 7.7
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
G+ APG G G+ GP GE +PG G G AP L G
Sbjct: 654 GEQGAPGPSGFQGLPGPP-GPPGEGGKPGDQGVPGEAGAPGLVGPRG 699
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGG---QGPPPAP 44
G+ PG G G DGP + RG++ PG +G QGP P
Sbjct: 912 GNPGPPGPPGPSGKDGP-KGARGDSGPPGRAGEPGLQGPAGPP 953
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 36.2 bits (82), Expect = 0.083
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
GD PGE G G+ GP +R GE PG G QGP P T G
Sbjct: 612 GDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 660
Score = 35.8 bits (81), Expect = 0.11
Identities = 21/48 (43%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 5 GDAAAPGEGGGGGVDGPQ-RDG-------RGEAEQPGGSGGQGPPPAP 44
G A PG G G DGP RDG RGE G G GPP +P
Sbjct: 960 GPAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSP 1007
Score = 35.0 bits (79), Expect = 0.18
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
GDA APG G G GPQ G G G QGPP A
Sbjct: 789 GDAGAPGPQGPSGAPGPQ-GPTGVTGPKGARGAQGPPGA 826
Score = 32.7 bits (73), Expect = 0.91
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPP 41
GD+ PG G G+ GP +GE G SG +GPP
Sbjct: 864 GDSGPPGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPP 902
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/40 (47%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
VG + APGE G G GPQ G QPG G GP A
Sbjct: 506 VGPSGAPGEDGRPGPPGPQ----GARGQPGVMGFPGPKGA 541
Score = 31.6 bits (70), Expect = 2.0
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
G+ PG G G G + RGE PG +G GPP A
Sbjct: 735 GEVGPPGPAGSAGARGAPGE-RGETGPPGPAGFAGPPGA 772
Score = 30.8 bits (68), Expect = 3.5
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 1 MAGVGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP--PPAP 44
M +G PG G G G Q + GE +PG SG GP PP P
Sbjct: 134 MGPMGPRGPPGPAGAPGPQGFQGNP-GEPGEPGVSGPMGPRGPPGP 178
Score = 30.8 bits (68), Expect = 3.5
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPP 41
G PG G G GP + RG +PGG G GPP
Sbjct: 399 GPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPP 437
Score = 30.8 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 10 PGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
PGE G G+ GP+ D RG+ + G G G LT +G
Sbjct: 683 PGERGAAGIAGPKGD-RGDVGEKGPEGAPGKDGGRGLTGPIG 723
Score = 30.4 bits (67), Expect = 4.5
Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDG-----------RGEAEQPGGSGGQGPPPAP 44
VG PG G G GP+ D RG +PG G GPP P
Sbjct: 47 VGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPP 98
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 5 GDAAAPGEGGGGGVDGP--------QRDGRGEAEQPGGSGGQGPPPAP 44
G APG+ GG G+ GP +GE PG +G G AP
Sbjct: 705 GPEGAPGKDGGRGLTGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAP 752
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 11/43 (25%)
Query: 10 PGEGGGGGVDGP-----------QRDGRGEAEQPGGSGGQGPP 41
PGE G GV GP + GEA +PG +G +GPP
Sbjct: 158 PGEPGEPGVSGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGPP 200
Score = 29.6 bits (65), Expect = 7.7
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAPQLTETLG 51
G+ APG G G+ GP GE +PG G G AP L G
Sbjct: 585 GEQGAPGPSGFQGLPGPP-GPPGEGGKPGDQGVPGEAGAPGLVGPRG 630
Score = 29.6 bits (65), Expect = 7.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGG---QGPPPAP 44
G+ PG G G DGP + RG++ PG +G QGP P
Sbjct: 843 GNPGPPGPPGPSGKDGP-KGARGDSGPPGRAGEPGLQGPAGPP 884
>gi|4503119 cancer/testis antigen 1B [Homo sapiens]
Length = 180
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP 40
G+A PGE G G GP+ G A PGG +GP
Sbjct: 29 GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
>gi|55743096 collagen, type XIV, alpha 1 [Homo sapiens]
Length = 1796
Score = 36.2 bits (82), Expect = 0.083
Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 GDAAAPG-EGGGGGVDGPQRDGR-GEAEQPGGSGGQGPPPAP 44
GD PG +G GGV P RDG G+ PG G GPP P
Sbjct: 1527 GDTGLPGPQGIPGGVGSPGRDGSPGQRGLPGKDGSSGPPGPP 1568
>gi|21281685 cancer/testis antigen 1A [Homo sapiens]
Length = 180
Score = 36.2 bits (82), Expect = 0.083
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGP 40
G+A PGE G G GP+ G A PGG +GP
Sbjct: 29 GNAGGPGEAGATGGRGPRGAGAARASGPGGGAPRGP 64
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 35.8 bits (81), Expect = 0.11
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
GD PG+ G G+DG GE PG GG GPP A
Sbjct: 1265 GDLGPPGDPGVSGIDGSP----GEKGDPGDVGGPGPPGA 1299
Score = 35.0 bits (79), Expect = 0.18
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
GDA PG G G+ GP+ D GE G SG GPP
Sbjct: 1208 GDAGDPGPPGAPGIPGPKGD-IGEKGDSGPSGAAGPP 1243
Score = 31.6 bits (70), Expect = 2.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
VG PGE G G +GP G+A +PG G GP +P
Sbjct: 571 VGQPGPPGEDGERGAEGPP-GPTGQAGEPGPRGLLGPRGSP 610
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
GD PG G G DGP+ G Q G +G +GPP
Sbjct: 746 GDQGKPGAPGPRGEDGPE----GPKGQAGQAGEEGPP 778
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 35.4 bits (80), Expect = 0.14
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 4 VGDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQGPPPAP 44
+G+A APG G G GP R G A PG +G GPP P
Sbjct: 973 LGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPP 1015
Score = 30.4 bits (67), Expect = 4.5
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G PG G G+ GP+ G QPG G QGPP
Sbjct: 1354 GPPGPPGPRGYPGIPGPK--GESIRGQPGPPGPQGPP 1388
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 35.4 bits (80), Expect = 0.14
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 4 VGDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQGPPPAP 44
+G+A APG G G GP R G A PG +G GPP P
Sbjct: 558 LGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPP 600
Score = 30.4 bits (67), Expect = 4.5
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G PG G G+ GP+ G QPG G QGPP
Sbjct: 939 GPPGPPGPRGYPGIPGPK--GESIRGQPGPPGPQGPP 973
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 35.4 bits (80), Expect = 0.14
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 4 VGDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGGSGGQGPPPAP 44
+G+A APG G G GP R G A PG +G GPP P
Sbjct: 738 LGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPP 780
Score = 30.4 bits (67), Expect = 4.5
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G PG G G+ GP+ G QPG G QGPP
Sbjct: 1119 GPPGPPGPRGYPGIPGPK--GESIRGQPGPPGPQGPP 1153
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.0 bits (79), Expect = 0.18
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 1 MAGVGDAAAPGEGGG------GGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
+ GVG+ PGE G GV GP+ + RGE + G G GPP A
Sbjct: 1260 VGGVGEKGEPGEAGNPGPPGEAGVGGPKGE-RGEKGEAGPPGAAGPPGA 1307
Score = 34.7 bits (78), Expect = 0.24
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGS---GGQGPP 41
G+A PG G GV GP +R +GEA PG + G +GPP
Sbjct: 1270 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP 1311
Score = 33.9 bits (76), Expect = 0.41
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPP-----PAPQ 45
G APG+ G GVDGP + G +PG G QG P P PQ
Sbjct: 670 GTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQ 717
Score = 32.7 bits (73), Expect = 0.91
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDGPQRD-----GRGEAEQPGGSGGQGPPPAP 44
GD PGE G G DG D G+ PG SG GPP P
Sbjct: 1327 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1371
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGG---SGGQGPPPAP 44
G A PG G G GP+ R RG +PG SGG GPP P
Sbjct: 883 GVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP 927
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 5 GDAAAPGEGGGGGVDGPQRD-GR-GEAEQPGGSGGQGPPPAPQLTETLGF 52
G++ PG G GV GP G+ G+ +PG GG+G P P GF
Sbjct: 565 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGF 614
Score = 32.0 bits (71), Expect = 1.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
+G PGE G G+ GP R G QPG +G GPP
Sbjct: 651 IGPRGLPGEAGPRGLLGP-RGTPGAPGQPGMAGVDGPP 687
Score = 30.0 bits (66), Expect = 5.9
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDG-PQRDG----RGEAEQPGGSGGQGPPPAP 44
G A +PGE G G G P + G +GE PG G QGP AP
Sbjct: 1129 GPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP 1173
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
G APG GG G GP R +G Q G G +G P P
Sbjct: 1168 GPVGAPGIAGGDGEPGP-RGQQGMFGQKGDEGARGFPGPP 1206
Score = 30.0 bits (66), Expect = 5.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G A PG G G+ GP GE PG +G GPP
Sbjct: 1411 GPAGKPGPEGLRGIPGPV----GEQGLPGAAGQDGPP 1443
Score = 30.0 bits (66), Expect = 5.9
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 5 GDAAAPGEGGGGGVDGP--------------------QRDGRGEAEQPGGSGGQGPPPAP 44
G +PG G GG+ GP + G A Q G SG GPP +P
Sbjct: 1489 GTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP 1548
Query: 45 ----QLTETLGFYESDRRRERRRG 64
++ + L S + R G
Sbjct: 1549 GPPGEVIQPLPILSSKKTRRHTEG 1572
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.0 bits (79), Expect = 0.18
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 1 MAGVGDAAAPGEGGG------GGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
+ GVG+ PGE G GV GP+ + RGE + G G GPP A
Sbjct: 1209 VGGVGEKGEPGEAGNPGPPGEAGVGGPKGE-RGEKGEAGPPGAAGPPGA 1256
Score = 34.7 bits (78), Expect = 0.24
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGS---GGQGPP 41
G+A PG G GV GP +R +GEA PG + G +GPP
Sbjct: 1219 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP 1260
Score = 33.9 bits (76), Expect = 0.41
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPP-----PAPQ 45
G APG+ G GVDGP + G +PG G QG P P PQ
Sbjct: 619 GTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQ 666
Score = 32.7 bits (73), Expect = 0.91
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDGPQRD-----GRGEAEQPGGSGGQGPPPAP 44
GD PGE G G DG D G+ PG SG GPP P
Sbjct: 1276 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1320
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGG---SGGQGPPPAP 44
G A PG G G GP+ R RG +PG SGG GPP P
Sbjct: 832 GVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP 876
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 5 GDAAAPGEGGGGGVDGPQRD-GR-GEAEQPGGSGGQGPPPAPQLTETLGF 52
G++ PG G GV GP G+ G+ +PG GG+G P P GF
Sbjct: 514 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGF 563
Score = 32.0 bits (71), Expect = 1.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
+G PGE G G+ GP R G QPG +G GPP
Sbjct: 600 IGPRGLPGEAGPRGLLGP-RGTPGAPGQPGMAGVDGPP 636
Score = 30.0 bits (66), Expect = 5.9
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDG-PQRDG----RGEAEQPGGSGGQGPPPAP 44
G A +PGE G G G P + G +GE PG G QGP AP
Sbjct: 1078 GPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP 1122
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
G APG GG G GP R +G Q G G +G P P
Sbjct: 1117 GPVGAPGIAGGDGEPGP-RGQQGMFGQKGDEGARGFPGPP 1155
Score = 30.0 bits (66), Expect = 5.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G A PG G G+ GP GE PG +G GPP
Sbjct: 1360 GPAGKPGPEGLRGIPGPV----GEQGLPGAAGQDGPP 1392
Score = 30.0 bits (66), Expect = 5.9
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 5 GDAAAPGEGGGGGVDGP--------------------QRDGRGEAEQPGGSGGQGPPPAP 44
G +PG G GG+ GP + G A Q G SG GPP +P
Sbjct: 1438 GTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP 1497
Query: 45 ----QLTETLGFYESDRRRERRRG 64
++ + L S + R G
Sbjct: 1498 GPPGEVIQPLPILSSKKTRRHTEG 1521
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.0 bits (79), Expect = 0.18
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 1 MAGVGDAAAPGEGGG------GGVDGPQRDGRGEAEQPGGSGGQGPPPA 43
+ GVG+ PGE G GV GP+ + RGE + G G GPP A
Sbjct: 1248 VGGVGEKGEPGEAGNPGPPGEAGVGGPKGE-RGEKGEAGPPGAAGPPGA 1295
Score = 34.7 bits (78), Expect = 0.24
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGS---GGQGPP 41
G+A PG G GV GP +R +GEA PG + G +GPP
Sbjct: 1258 GEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPP 1299
Score = 33.9 bits (76), Expect = 0.41
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 5 GDAAAPGEGGGGGVDGP--QRDGRGEAEQPGGSGGQGPP-----PAPQ 45
G APG+ G GVDGP + G +PG G QG P P PQ
Sbjct: 658 GTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQ 705
Score = 32.7 bits (73), Expect = 0.91
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDGPQRD-----GRGEAEQPGGSGGQGPPPAP 44
GD PGE G G DG D G+ PG SG GPP P
Sbjct: 1315 GDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1359
Score = 32.3 bits (72), Expect = 1.2
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDGPQ--RDGRGEAEQPGG---SGGQGPPPAP 44
G A PG G G GP+ R RG +PG SGG GPP P
Sbjct: 871 GVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP 915
Score = 32.0 bits (71), Expect = 1.6
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 5 GDAAAPGEGGGGGVDGPQRD-GR-GEAEQPGGSGGQGPPPAPQLTETLGF 52
G++ PG G GV GP G+ G+ +PG GG+G P P GF
Sbjct: 553 GESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGAKGDRGF 602
Score = 32.0 bits (71), Expect = 1.6
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 4 VGDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
+G PGE G G+ GP R G QPG +G GPP
Sbjct: 639 IGPRGLPGEAGPRGLLGP-RGTPGAPGQPGMAGVDGPP 675
Score = 30.0 bits (66), Expect = 5.9
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 5 GDAAAPGEGGGGGVDG-PQRDG----RGEAEQPGGSGGQGPPPAP 44
G A +PGE G G G P + G +GE PG G QGP AP
Sbjct: 1117 GPAGSPGEDGDKGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAP 1161
Score = 30.0 bits (66), Expect = 5.9
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPPPAP 44
G APG GG G GP R +G Q G G +G P P
Sbjct: 1156 GPVGAPGIAGGDGEPGP-RGQQGMFGQKGDEGARGFPGPP 1194
Score = 30.0 bits (66), Expect = 5.9
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 5 GDAAAPGEGGGGGVDGPQRDGRGEAEQPGGSGGQGPP 41
G A PG G G+ GP GE PG +G GPP
Sbjct: 1399 GPAGKPGPEGLRGIPGPV----GEQGLPGAAGQDGPP 1431
Score = 30.0 bits (66), Expect = 5.9
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 5 GDAAAPGEGGGGGVDGP--------------------QRDGRGEAEQPGGSGGQGPPPAP 44
G +PG G GG+ GP + G A Q G SG GPP +P
Sbjct: 1477 GTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPKGNKGSTGPAGQKGDSGLPGPPGSP 1536
Query: 45 ----QLTETLGFYESDRRRERRRG 64
++ + L S + R G
Sbjct: 1537 GPPGEVIQPLPILSSKKTRRHTEG 1560
>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
Length = 422
Score = 35.0 bits (79), Expect = 0.18
Identities = 23/58 (39%), Positives = 25/58 (43%)
Query: 20 GPQRDGRGEAEQPGGSGGQGPPPAPQLTETLGFYESDRRRERRRGRTELSLLRFLSAE 77
G Q G+G A GG G GP P P L L ES R R R + L LS E
Sbjct: 15 GQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCE 72
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,095,962
Number of Sequences: 37866
Number of extensions: 998894
Number of successful extensions: 8496
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 6653
Number of HSP's gapped (non-prelim): 1851
length of query: 567
length of database: 18,247,518
effective HSP length: 108
effective length of query: 459
effective length of database: 14,157,990
effective search space: 6498517410
effective search space used: 6498517410
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.