Guide to the Human Genome
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Name: UBE2Q1 Sequence: fasta or formatted (422aa) NCBI GI: 31543906
Description:

ubiquitin-conjugating enzyme E2Q

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         28           2
 C cysteine            1.7          7           1
 D aspartate           6.6         28           2
 E glutamate           7.8         33           3
 F phenylalanine       2.6         11           1
 G glycine            10.2         43           3
 H histidine           2.1          9           1
 I isoleucine          4.5         19           2
 K lysine              6.2         26           2
 L leucine            10.4         44           3
 M methionine          1.7          7           1
 N asparagine          3.6         15           1
 P proline             7.3         31           2
 Q glutamine           6.6         28           3
 R arginine            3.8         16           2
 S serine              6.9         29           2
 T threonine           2.1          9           1
 V valine              5.5         23           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-conjugating enzyme E2Q 
UBE2Q2                0.628   ubiquitin-conjugating enzyme E2Q 2 isoform 1 
UBE2Q2                0.566   ubiquitin-conjugating enzyme E2Q 2 isoform 2 
FLJ25076              0.183   probable ubiquitin-conjugating enzyme E2 FLJ25076 [...
UBE2E3                0.023   ubiquitin-conjugating enzyme E2E 3 
UBE2E3                0.023   ubiquitin-conjugating enzyme E2E 3 
MYT1L                 0.023   myelin transcription factor 1-like 
UBE2K                 0.021   ubiquitin-conjugating enzyme E2K isoform 2 
UBE2K                 0.021   ubiquitin-conjugating enzyme E2K isoform 1 
KHSRP                 0.021   KH-type splicing regulatory protein 
UBE2E2                0.019   ubiquitin-conjugating enzyme E2E 2 
UBE2W                 0.019   ubiquitin-conjugating enzyme E2W (putative) isoform...
UBE2W                 0.019   ubiquitin-conjugating enzyme E2W (putative) isoform ...
LOC728792             0.018   PREDICTED: hypothetical protein 
MED25                 0.018   mediator complex subunit 25 
RBM27                 0.018   RNA binding motif protein 27 
MEX3D                 0.018   ring finger and KH domain containing 1 
FUSSEL18              0.017   PREDICTED: functional smad suppressing element 18 [...
FUSSEL18              0.017   PREDICTED: functional smad suppressing element 18 [...
TAF4                  0.017   TBP-associated factor 4 
BAT2                  0.017   HLA-B associated transcript-2 
RBM12                 0.017   RNA binding motif protein 12 
RBM12                 0.017   RNA binding motif protein 12 
POU4F1                0.017   POU domain, class 4, transcription factor 1 
WBP11                 0.017   WW domain binding protein 11 
PHOX2B                0.016   paired-like homeobox 2b 
MAP3K12               0.016   mitogen-activated protein kinase kinase kinase 12 [H...
HOXD9                 0.016   homeobox D9 
ATAD2                 0.016   ATPase family, AAA domain containing 2 
BOD1L                 0.016   biorientation of chromosomes in cell division 1-like...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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