Guide to the Human Genome
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Name: C2orf21 Sequence: fasta or formatted (3258aa) NCBI GI: 197209826
Description:

chromosome 2 open reading frame 21 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {320aa} chromosome 2 open reading frame 21 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4        209           4
 C cysteine            2.1         70           2
 D aspartate           4.3        140           2
 E glutamate           7.7        252           3
 F phenylalanine       3.8        124           2
 G glycine             6.0        196          10
 H histidine           3.1        102           2
 I isoleucine          4.1        133           2
 K lysine              4.9        160           2
 L leucine            11.2        366           3
 M methionine          2.3         75           1
 N asparagine          3.7        122           2
 P proline             5.7        186           3
 Q glutamine           4.9        160           2
 R arginine            6.2        201           3
 S serine              9.8        320           3
 T threonine           5.0        164           3
 V valine              5.8        189           2
 W tryptophan          1.1         36           1
 Y tyrosine            1.6         53           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 2 open reading frame 21 isoform 1 
C2orf21               0.095   chromosome 2 open reading frame 21 isoform 2 
SHOX2                 0.007   short stature homeobox 2 isoform a 
POU4F1                0.006   POU domain, class 4, transcription factor 1 
KRT10                 0.005   keratin 10 
FAM98B                0.005   family with sequence similarity 98, member B isofor...
KRT1                  0.005   keratin 1 
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.005   WAS/WASL interacting protein family, member 1 
LOR                   0.005   loricrin 
RFX1                  0.005   regulatory factor X1 
PURA                  0.005   purine-rich element binding protein A 
FBL                   0.004   fibrillarin 
LRCH2                 0.004   leucine-rich repeats and calponin homology (CH) dom...
DHX36                 0.004   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 2...
DHX36                 0.004   DEAH (Asp-Glu-Ala-His) box polypeptide 36 isoform 1...
ARID1B                0.004   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.004   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.004   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
SIX3                  0.004   sine oculis homeobox homolog 3 
ZIC2                  0.004   zinc finger protein of the cerebellum 2 
CAPNS1                0.004   calpain, small subunit 1 
CAPNS1                0.004   calpain, small subunit 1 
YEATS2                0.004   YEATS domain containing 2 
HOXB3                 0.004   homeobox B3 
HNRNPL                0.004   heterogeneous nuclear ribonucleoprotein L isoform a ...
KRT13                 0.004   keratin 13 isoform b 
KRT13                 0.004   keratin 13 isoform a 
RALY                  0.004   RNA binding protein (autoantigenic, hnRNP-associated ...
RALY                  0.004   RNA binding protein (autoantigenic, hnRNP-associated...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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