Guide to the Human Genome
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Name: NHLH1 Sequence: fasta or formatted (133aa) NCBI GI: 5031943
Description:

nescient helix loop helix 1

Referenced in:

Helix-Loop-Helix Transcription Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         11           1
 C cysteine            1.5          2           1
 D aspartate           5.3          7           1
 E glutamate           8.3         11           2
 F phenylalanine       2.3          3           1
 G glycine            11.3         15           3
 H histidine           3.0          4           1
 I isoleucine          3.8          5           1
 K lysine              4.5          6           2
 L leucine            11.3         15           2
 M methionine          2.3          3           2
 N asparagine          2.3          3           1
 P proline             8.3         11           2
 Q glutamine           1.5          2           1
 R arginine           11.3         15           6
 S serine              5.3          7           1
 T threonine           5.3          7           1
 V valine              2.3          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   nescient helix loop helix 1 
NHLH2                 0.482   nescient helix loop helix 2 
NHLH2                 0.482   nescient helix loop helix 2 
TWIST1                0.181   twist 
SCXB                  0.169   scleraxis homolog B 
SCXA                  0.169   scleraxis homolog A 
HAND2                 0.165   basic helix-loop-helix transcription factor HAND2 [H...
TCF15                 0.161   basic helix-loop-helix transcription factor 15 [Homo...
LOC100129654          0.161   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.161   PREDICTED: similar to transcription factor 23 [Homo...
HAND1                 0.153   basic helix-loop-helix transcription factor HAND1 [Ho...
PTF1A                 0.153   pancreas specific transcription factor, 1a 
TAL1                  0.153   T-cell acute lymphocytic leukemia 1 
TAL2                  0.149   T-cell acute lymphocytic leukemia 2 
LYL1                  0.145   lymphoblastic leukemia derived sequence 1 
MSC                   0.141   musculin 
TWIST2                0.137   twist homolog 2 
TCF21                 0.137   transcription factor 21 
TCF21                 0.137   transcription factor 21 
LOC100129654          0.137   PREDICTED: similar to transcription factor 23 [Homo...
FERD3L                0.120   nephew of atonal 3 
NEUROG2               0.120   neurogenin 2 
BHLHA15               0.116   basic helix-loop-helix family, member a15 
ATOH7                 0.108   atonal homolog 7 
NEUROG3               0.104   neurogenin 3 
TCF23                 0.104   transcription factor 23 
NEUROG1               0.100   neurogenin 1 
MESP2                 0.100   mesoderm posterior 2 homolog 
ASCL1                 0.096   achaete-scute complex homolog 1 
NEUROD6               0.096   neurogenic differentiation 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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